Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0884 ATGGCTGAAGAAGCAGGCATGTTTATGGTACATCAAACCGTTGGCAGTGTTCTTTGTTGCAAATGTGGTATACCAATGACACCGAATGCTGCAAATATGTGTGTCAAGTGTTTGCGCTCTGAAATTGATATTACAGAAGGTTTGCAGAAGCATGTGACCATCGTGCACTGCCCTGAGTGTGATACCTACTTGCAGCCACCGAAAACTTGGATTAAGGCACAATTGGAGTCGAAAGAGCTCTTAACATTTTGCGTGAAGAGACTAAAGAATTTGAATAAAGTTAGGTTAATTCATGCAGAATTTATTTGGACTGAGCCTCATTCCAAGAGGATCAAGGTCAAGCTAAGGGTTCAGAAGGAGGTTCTCAACGGAGCAATACTTGAGCAGGCTTATATTGTTGAATTTGTTCAGCAAGAGCACATGTGTGAATCTTGTTCTAGAGTCCAGGCCAATCCAGACCAATGGGTGGCTTCCGTGCAGCTTCGGCAACATGTTCCTCACAGACGGACTTTCTTTTATTTGGAGCAGCTTATTCTTAGGCATGATGCTGCAGGCCGTGCTATAAAAATTAAGCAAATGGATCAGGGTATTGATTTCTTCTTTGCTAATCGGAGTCATGGTGTAAAATTTGTGGAGTTTATTGGTAAAGTGACTCCAAGTAGGAGCCGTCATGACAAACAACTTGTGTCCCATGATACCAAGAGCAATAACTACAATTATAAGTACACTTTCTCTGTTGAAATCTGTCCAATATGCCGTGAGGATCTGATCTGCCTCCCTCCAAAAGTTGCTGTTAGTTTGGGAAATCTTGGTCCTCTAGTGATTTGCACAAAAGTGAGCAACAATATTGCTTTACTGGATCCTTTTACTCTTAGGCACTGTTTCTTGGATGCTGATCAGTATTGGAGATCATCTTTTAAGGCTCTACTGTCTAGTAGGCAGCTTGTGGAATATATAGTATTGGATGTGGAGATTGTTTCTTCTGAAGTTAATGTTGGTGGCTCAAAGTATGCATTAGCTGATGCTCAAGTGGCTCGTGTATCAGATTTTGGGAAGAATGATACAATTTTCAACATAAGAACACATCTAGGTCATCTTTTAAACCCTGGGGACCATGCTCTGGGTTATGACGTATATGCAGCTAATAGTAATGATATGGAACTTGAAAAATACAGGGGTTTTGTCCTTCCAGAAGCAATTTTGATAAAGAAGAGTTATGAGGAGAAGCGCCAAAGAAAGCGTGGAAAGCCTCGTTCATGGAAGCTTAAATCCCTTAACATGGAAGTGGATGATTCCAAGGGTAGAGCTGACCAAGAGAAGATGAATACAGAGTATGAAGTGTTCTTAAGAGATTTGGAGGAGGACCCTGAGTTGAGGTTTAATATATCATTATATCGAAATAAGGAATATCAACCATCAGAGATGGCTTCTATGACCGATGGAGAGGATTTACCTTCTGTGCCTTTGGAGGAGTTGCTTGCTGATCTAGATTTGAGTGAAGAAGAAGATGGAGATGTTAGCATGAGGGAATGA 1533 0.411 MAEEAGMFMVHQTVGSVLCCKCGIPMTPNAANMCVKCLRSEIDITEGLQKHVTIVHCPECDTYLQPPKTWIKAQLESKELLTFCVKRLKNLNKVRLIHAEFIWTEPHSKRIKVKLRVQKEVLNGAILEQAYIVEFVQQEHMCESCSRVQANPDQWVASVQLRQHVPHRRTFFYLEQLILRHDAAGRAIKIKQMDQGIDFFFANRSHGVKFVEFIGKVTPSRSRHDKQLVSHDTKSNNYNYKYTFSVEICPICREDLICLPPKVAVSLGNLGPLVICTKVSNNIALLDPFTLRHCFLDADQYWRSSFKALLSSRQLVEYIVLDVEIVSSEVNVGGSKYALADAQVARVSDFGKNDTIFNIRTHLGHLLNPGDHALGYDVYAANSNDMELEKYRGFVLPEAILIKKSYEEKRQRKRGKPRSWKLKSLNMEVDDSKGRADQEKMNTEYEVFLRDLEEDPELRFNISLYRNKEYQPSEMASMTDGEDLPSVPLEELLADLDLSEEEDGDVSMRE* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0884 510 Pfam NMD3 family 19 248 IPR007064 -
Vvi4g0884 510 PANTHER NONSENSE-MEDIATED MRNA DECAY PROTEIN 3 9 501 IPR039768 GO:0043023
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0884 Vvi-Chr4 13330552 13332084 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0884 K07562 - vvi:100245020 1025