Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0891 ATGATGACTTTTATTACATTGAAAGAAATCAAAAAAGAATTTTTTTGGAAGTTTGAAGGAGACCAAAATAAGAGCGCTATTAAGAAGTTTGTGAAGGCTAGTTCACATTCTGCTGTTCCATGGAGCTCTACTAATAGAGAAGTTGTGAGATACAATATTCCACCTCAGCAGGCTTTCAGAAGCCCTTCTTGGGTTTCTCAAAAGCCCCCCACAAAAGAAAACACCAAACCAGTAGAATTCAAACTCCACACCCAACAAAGAGCGCTAAAACGTGCCATGTTCAACTATTCAGTAGCAACCAAGCTATATTTCATAGAGCAACAGAAGAAGCTAGAAGAGAGGGTGCAGAAGATGATACAGGAGGAAGAGGTCAAGCTGCTGAGAAAGGAGATGATCCCTAGAGCCCAATTGATGCCTTTTTTTGATAGACCCTTCTATCCACAAAGATCAAATAGGCCTTTGACGGTTCCTAAAGAGCCATGTTTCCACAACTTGAGTAGCAAATGCTGGAGCAGTGGAGTTGATGATTTTTCAGCAGTGTCCAGCTATGAAGCCCATTAA 561 0.41 MMTFITLKEIKKEFFWKFEGDQNKSAIKKFVKASSHSAVPWSSTNREVVRYNIPPQQAFRSPSWVSQKPPTKENTKPVEFKLHTQQRALKRAMFNYSVATKLYFIEQQKKLEERVQKMIQEEEVKLLRKEMIPRAQLMPFFDRPFYPQRSNRPLTVPKEPCFHNLSSKCWSSGVDDFSAVSSYEAH* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0891 186 Pfam Targeting protein for Xklp2 (TPX2) domain 80 155 IPR027329 -
Vvi4g0891 186 Coils Coil 105 125 - -
Vvi4g0891 186 PANTHER TARGETING PROTEIN FOR XKLP2 56 166 IPR009675 GO:0005819|GO:0005874|GO:0032147|GO:0060236
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0891 Vvi-Chr4 13511713 13532182 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0891 - - vvi:109121435 326.635