Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi1g1181 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1182 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1183 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1184 . . . . . . . . . . Ahy15g2001 . Aip05g02212 . . . Amo15g1145 . . . . . . . . . . . . . . . . . Dod02g1835 . . . . . . Gma01g00666 . . . . . . . Lal22g0658 . . . . . . . . . . . . . . . . . . . . . . . . Mal6g2648 . . . . . . . Mtr5g1900 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tsu05g02357 . . . . . . . . . . . . .
Vvi1g1185 . . . . . . Aed11g0545 . . . . . . . . . . . . . . . . . . . Bva01g01845 Bva11g00863 Car02g00921 . Cca06g00478 . . . . . . . . . Gma02g01145 . . . Gso2g1040 . . . Lal6g1147 . Lal18g0959 . . . Lan11g1108 . Lan11g1108 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu2g1391 . . Sto6g2885 . . . . . . . . . . . . . . . . . .
Vvi1g1186 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva01g00965 . Car06g02161 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1187 . . . . . . . . . . Ahy15g2006 . Aip05g02215 . . . Amo15g1156 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja2g1342 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1188 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1189 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1190 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Vvi Vvi1g1181 Chr1 16271824 16283640 -
Vvi Vvi1g1182 Chr1 16286269 16286567 +
Vvi Vvi1g1183 Chr1 16288424 16288864 +
Vvi Vvi1g1184 Chr1 16384467 16390533 +
Ahy Ahy15g2001 Chr15 111082540 111089643 -
Aip Aip05g02212 Chr05 102248694 102255240 -
Amo Amo15g1145 Chr15 90430686 90437675 -
Dod Dod02g1835 Chr02 24685228 24692188 +
Gma Gma01g00666 Chr01 11981709 11987593 +
Lal Lal22g0658 Chr22 4670236 4675102 -
Mal Mal6g2648 Chr6 66484590 66494631 +
Mtr Mtr5g1900 Chr5 22127780 22143353 -
Tsu Tsu05g02357 Chr05 31254155 31259289 -
Vvi Vvi1g1185 Chr1 16444085 16444672 -
Aed Aed11g0545 Chr11 4980243 4980827 +
Bva Bva01g01845 Chr01 18960986 18961540 -
Bva Bva11g00863 Chr11 11050700 11051248 -
Car Car02g00921 Chr02 15130090 15131005 +
Cca Cca06g00478 Chr06 14403111 14404121 -
Gma Gma02g01145 Chr02 12653798 12654397 +
Gso Gso2g1040 Chr2 12446906 12447898 +
Lal Lal6g1147 Chr6 8729330 8751776 +
Lal Lal18g0959 Chr18 12511982 12512488 +
Lan Lan11g1108 Chr11 14463065 14487095 +
Lan Lan11g1108 Chr11 14463065 14487095 +
Ssu Ssu2g1391 Chr2 58121335 58121931 -
Sto Sto6g2885 Chr6 36050899 36061339 -
Vvi Vvi1g1186 Chr1 16474225 16475327 +
Bva Bva01g00965 Chr01 7460289 7464665 -
Car Car06g02161 Chr06 22091945 22094777 +
Vvi Vvi1g1187 Chr1 16476882 16488031 -
Ahy Ahy15g2006 Chr15 112078441 112092714 -
Aip Aip05g02215 Chr05 103158553 103171742 -
Amo Amo15g1156 Chr15 91589170 91602997 -
Lja Lja2g1342 Chr2 12831132 12838874 +
Vvi Vvi1g1188 Chr1 16513246 16515107 -
Vvi Vvi1g1189 Chr1 16525845 16531869 +
Vvi Vvi1g1190 Chr1 16535569 16535881 +