Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00666 ATGGCATGTTCTTCATTCACATTTGCCAATCCATCATCAATTCCAAGACCGAGAAATTCATTACTTTCTTCTTCTCTAAGCCCGAGAGCCATGGCCAAAGAGCTTTACTTCAACCACGACGGTTCGGCCATGAAGAAGCTGTTGGCAGGAGTGGACATGGTGGCTGAGCTGCTTGGTGTGACATTGGGTCCAAAGGGGAGAAATGTTGTGCTGCCAAATAAGTATGGACCACCCAAGATTGTAAATGATGGAGAAACTGTTCTCAAAGAGATTGAATTGGAAGATCCGTTGGAAAATGTTGGAGTTAAATTGGTGAGACAAGCTGGTGCTAAAACCAACGACCAAGCTGGTGATGGCTCAACTACATCTGTTGTTCTTGCTCATGGCTTAATCAGAGAGGGGGCAAAGGTTATTGCAGCTGGAATGAATCCTGTTCAAATTGCTCGTGGCATTGAGAAGACAGCAACAGCGCTTGTTTCTGAACTCAGATTGATGTCAAGAGAAGTTGAGGATCATGAGCTTGCAGATGTTGCTGCAGTCAGTGCTGGGAATGATTATTCAGTTGGAAACATGATTTCCGAGGCTCTGCACCAAGTAGGCAGAAGCGGAGTAGTGACAATTGAAACCGGAAGGAGTACCGAGAATAGTCTTGAGATTGTGGAAGGAATGCAATTTGATCGCGGATATCTGTCCCCATACTTTGTCAACAATAGAAGAAAGATGACAGTTGAACTCCACAACTGCAAGTTGCTTTTGGTCGACAAGAAAATCACAAAAACAAAGGAGTTGATCAACATATTGAACAATTCTGCGAAAGAAAAATATCCAGTTTTGATAGTTGCAGAGGGCATTGAGCAAGAAGCTCTAGCTCCAGTCATTAAAAATAAACTTCGGGGTGCTCTTAAGGTAGCTGCCATTAAGGCTCCTGCCTTCGGTGAACGCAAGACCCATTACTTGGAAGATATTGCCATCTTGACTGGAGGTACTGTAATCAGAGAAGATATGGGTTTCAACCTAGAAAAGGCTCACAAGAATGATCTGGGTTCTGCTACTAAGGTTGTCATAACAAAGAATTCTACCTTAATAGTTACTGATGGGAGTACTCGAGAAGCTGTTGAGAAGAGGGTTTGCCAACTTAGGAGGCTTGTTGAGAATACAGTGGAAAATTTCCAAAAAAAGATATTGAATGAAAGGATAGCAAGATTATCTGGGGGCATTGCCATTCTTCAGGTAGGAGCACAAACACAGGTAGAACTGAAGGATAAACAGTTAAGAATAGAAGATGCTCTAAATGCAACAAAGGCCGCAATCGAGGAAGGTGTAGTAGTTGGTGGTGGCTGTTGCCTTTTAAGACTATCCCAAAAGGTGGATGGCATAAAAAAACTCCTGGAAAATGAAGAACAACAGATTGGAGCTGAAATCTTCAGGAGAGCATTGAGCTATCCTACAAGAATGATAGCAAAGAATGCTGGTGTAAATGGCAATGTCATCATAGATAAGGTTTTATCAGACGATAACCTGAATTTTGGTTACAATGCTGCTAGAGACTGTTATGAGGATCTCATGAAGGCTGGGATCATGGATCCAACTAAGGTAGTTAGGTGTTGTATAGAGCATTCAGCTTCTGTGGCCAAGGCATTTCTAACATCTAGTGCGGTTGTGGTTGAGCGCAAGGAATTAAAGCCCATACCAATACCACGAAGAAAGCCCATGCCCACCTCAGGTAATGAATTAGATTCATTACCAATACCACGTAGAAAgcccatgcccatgcccatgcccatgGCTACACCAGGTTTAGGACCAATGGGCTTTTAA 1818 0.4208 MACSSFTFANPSSIPRPRNSLLSSSLSPRAMAKELYFNHDGSAMKKLLAGVDMVAELLGVTLGPKGRNVVLPNKYGPPKIVNDGETVLKEIELEDPLENVGVKLVRQAGAKTNDQAGDGSTTSVVLAHGLIREGAKVIAAGMNPVQIARGIEKTATALVSELRLMSREVEDHELADVAAVSAGNDYSVGNMISEALHQVGRSGVVTIETGRSTENSLEIVEGMQFDRGYLSPYFVNNRRKMTVELHNCKLLLVDKKITKTKELINILNNSAKEKYPVLIVAEGIEQEALAPVIKNKLRGALKVAAIKAPAFGERKTHYLEDIAILTGGTVIREDMGFNLEKAHKNDLGSATKVVITKNSTLIVTDGSTREAVEKRVCQLRRLVENTVENFQKKILNERIARLSGGIAILQVGAQTQVELKDKQLRIEDALNATKAAIEEGVVVGGGCCLLRLSQKVDGIKKLLENEEQQIGAEIFRRALSYPTRMIAKNAGVNGNVIIDKVLSDDNLNFGYNAARDCYEDLMKAGIMDPTKVVRCCIEHSASVAKAFLTSSAVVVERKELKPIPIPRRKPMPTSGNELDSLPIPRRKPMPMPMPMATPGLGPMGF 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00666 605 Gene3D - 40 555 IPR027413 -
Gma01g00666 605 Gene3D GroEL 222 403 IPR027409 -
Gma01g00666 605 MobiDBLite consensus disorder prediction 564 605 - -
Gma01g00666 605 Pfam TCP-1/cpn60 chaperonin family 54 557 IPR002423 GO:0005524
Gma01g00666 605 CDD GroEL 33 556 IPR001844 GO:0042026|GO:0140662
Gma01g00666 605 TIGRFAM GroEL: chaperonin GroL 32 559 IPR001844 GO:0042026|GO:0140662
Gma01g00666 605 SUPERFAMILY GroEL apical domain-like 214 406 IPR027409 -
Gma01g00666 605 PANTHER CHAPERONIN 60 SUBUNIT BETA 4, CHLOROPLASTIC 22 568 - -
Gma01g00666 605 Coils Coil 449 469 - -
Gma01g00666 605 SUPERFAMILY GroEL-intermediate domain like 171 226 IPR027410 -
Gma01g00666 605 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 22 568 - -
Gma01g00666 605 ProSitePatterns Chaperonins cpn60 signature. 435 446 IPR018370 GO:0005524|GO:0006457
Gma01g00666 605 SUPERFAMILY GroEL equatorial domain-like 40 554 IPR027413 -
Gma01g00666 605 MobiDBLite consensus disorder prediction 1 21 - -
Gma01g00666 605 Gene3D - 168 440 IPR027410 -
Gma01g00666 605 PRINTS 60kDa chaperonin signature 58 84 IPR001844 GO:0042026|GO:0140662
Gma01g00666 605 PRINTS 60kDa chaperonin signature 114 141 IPR001844 GO:0042026|GO:0140662
Gma01g00666 605 PRINTS 60kDa chaperonin signature 298 321 IPR001844 GO:0042026|GO:0140662
Gma01g00666 605 PRINTS 60kDa chaperonin signature 380 405 IPR001844 GO:0042026|GO:0140662
Gma01g00666 605 PRINTS 60kDa chaperonin signature 428 449 IPR001844 GO:0042026|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00666 Gma-Chr1 11981709 11987593 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00666 K04077 - gmx:100796464 1104.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00666 01 11981709 11987593 Gma01g00666 01 11981709 11987593 ECH