Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1835 ATGGCATGTTCTCCTTCCCCTGTATCTGCATTCTCCTTTGCCAGCTCATCACTTCCCAGACCCAGAACTTCAACTTCTTCTGTTCTAAACCCAAGAGCTATGGCCAAAGAGCTTTACTTCAACCATGATGGTTCAGCCACCAAGAAGCTTCTGGCAGGGGTGGACATGGTGGCAGAGCTGCTTGGAGTTACATTGGGTCCAAAGGGGAGAAATGTTGTGCTACAGAACAAGTATGGGCCACCAAAGATAGTGAATGATGGAGAAACTGTTCTCAAAGAGATTGAATTGGAAGACCCGTTGGAGAATGTTGGGGTTAAATTGGTAAGACAAGCAGGTGCAAAAACCAATGACCTTGCTGGTGATGGCTCAACTACATCTGTTGTGCTAGCCCATGGCCTAATCACAGAGGGGACAAAGGTTATTGCAGCAGGAATGAATCCTGTCCAAATTGCTCGTGGAATTGAGAAGACGGCGGTTGCACTTGTTTCTGAACTCAATTTGATGTCTAGACAAGTTGAGGATCATGAGCTTGTAGATGTTGCTGCAGTCAGTGCAGGGAATGATTATGCAGTTGGAAACATGATTTCTGAGGCCCTGCATCAAGTAGGCAGGAGGGGGGTAGTGACAATTGAAAAAGGAAGGTGTACTGAGAATAGTCTAGAGATTGTAGAAGGAATGCAATTTGATCGCGGATATCTGTCCCCATACTTTGTCACCGATCGAAGAAAGATGACAGTTGAACTCCACAACTGCAAGTTGCTTTTGGTCGACAAAAAAATCACAAACCCAAAGGAGATGATTAACATATTGAACAGTGCCGTGGAAGAGAAGTATCCCATTGTTATAGTTGCTGAGGGCATTGAGCAGGAAGCTCTGGCACCAGTTATTAAAAATAAACTCAGGGGTGTGCTTAAGGCAGCTGCTATTAAGGCTCCTGCCTTTGGTGAGCGCAAAACCCACTGTTTAGAAGACATTGCCATCTTGACAGGAGGCACTGTTATCAGAGAAGACATGGGCTTGACCCTGGAAAAGGCAAGCAACGATGTGCTGGGTTCTGCTACTAAGATTGTCATAACAAAGAATTCTACCCTAATAGTTACTGATGGGAGTACTAGAGCTTCTGTTGAGAAGAGGGTTAATCAGCTTCAGAAACTTGTCCAGAATACTGAGGAAAATTTCCAAAAGAAGATACTGAATGAAAGGATAGCAAGATTATCAGGGCACATTGCCATTCTTCAGGTGGGAGCACAAACACAAGTAGAGCTGAAGGACAAGCAATTGAGAATTGAAGATGCTCTCAATGCAGCCAAGGCTGCAATAGAGGAAGGTGTAGTAGTTGGTGGTGGCTGTAGCCTGTTAAGGCTATCTAAGAAGGTGGATGACATGAAAAACCTCCTGGACAATGAAGAACAAAAGATTGGTGCTGAGATATTCAAAAGAGCTTTGCGCTATCCTGCTAGAATGATAGCAAAAAATGCTGGTGTAAATGGGAATGTCGTCATAGATAAGGTTTTATCAGACGATAACGTGAATTTTGGTTATAATGCTGCCAAAGACTGTTATGAGGATCTTATGAAGGCTGGGATCATGGATCCAACAAAGGTAGTTAGATGTTGTATAGAGCATGCGGCATCTGTGGCCAAGGCATTTCTTACATCTAATGCTGTTGTGATTGACATCACCGAATTACGGCCCATTCCACGAATAAAGCCCCCAATGATGCCTCAGGTTTAG 1734 0.4406 MACSPSPVSAFSFASSSLPRPRTSTSSVLNPRAMAKELYFNHDGSATKKLLAGVDMVAELLGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENVGVKLVRQAGAKTNDLAGDGSTTSVVLAHGLITEGTKVIAAGMNPVQIARGIEKTAVALVSELNLMSRQVEDHELVDVAAVSAGNDYAVGNMISEALHQVGRRGVVTIEKGRCTENSLEIVEGMQFDRGYLSPYFVTDRRKMTVELHNCKLLLVDKKITNPKEMINILNSAVEEKYPIVIVAEGIEQEALAPVIKNKLRGVLKAAAIKAPAFGERKTHCLEDIAILTGGTVIREDMGLTLEKASNDVLGSATKIVITKNSTLIVTDGSTRASVEKRVNQLQKLVQNTEENFQKKILNERIARLSGHIAILQVGAQTQVELKDKQLRIEDALNAAKAAIEEGVVVGGGCSLLRLSKKVDDMKNLLDNEEQKIGAEIFKRALRYPARMIAKNAGVNGNVVIDKVLSDDNVNFGYNAAKDCYEDLMKAGIMDPTKVVRCCIEHAASVAKAFLTSNAVVIDITELRPIPRIKPPMMPQV* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1835 577 ProSitePatterns Chaperonins cpn60 signature. 438 449 IPR018370 GO:0005524|GO:0006457
Dod02g1835 577 Gene3D - 171 443 IPR027410 -
Dod02g1835 577 TIGRFAM GroEL: chaperonin GroL 35 562 IPR001844 GO:0042026|GO:0140662
Dod02g1835 577 PRINTS 60kDa chaperonin signature 431 452 IPR001844 GO:0042026|GO:0140662
Dod02g1835 577 PRINTS 60kDa chaperonin signature 61 87 IPR001844 GO:0042026|GO:0140662
Dod02g1835 577 PRINTS 60kDa chaperonin signature 301 324 IPR001844 GO:0042026|GO:0140662
Dod02g1835 577 PRINTS 60kDa chaperonin signature 117 144 IPR001844 GO:0042026|GO:0140662
Dod02g1835 577 PRINTS 60kDa chaperonin signature 383 408 IPR001844 GO:0042026|GO:0140662
Dod02g1835 577 SUPERFAMILY GroEL-intermediate domain like 174 229 IPR027410 -
Dod02g1835 577 Coils Coil 422 442 - -
Dod02g1835 577 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 1 564 - -
Dod02g1835 577 SUPERFAMILY GroEL equatorial domain-like 43 557 IPR027413 -
Dod02g1835 577 SUPERFAMILY GroEL apical domain-like 217 409 IPR027409 -
Dod02g1835 577 Coils Coil 372 399 - -
Dod02g1835 577 CDD GroEL 36 559 IPR001844 GO:0042026|GO:0140662
Dod02g1835 577 MobiDBLite consensus disorder prediction 1 26 - -
Dod02g1835 577 Pfam TCP-1/cpn60 chaperonin family 57 559 IPR002423 GO:0005524
Dod02g1835 577 Gene3D GroEL 225 406 IPR027409 -
Dod02g1835 577 Coils Coil 452 472 - -
Dod02g1835 577 Gene3D - 43 557 IPR027413 -
Dod02g1835 577 PANTHER CHAPERONIN 60 SUBUNIT BETA 4, CHLOROPLASTIC 1 564 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1835 Dod-Chr2 24685228 24692188 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1835 K04077 - gmx:100796464 920.228
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g1835 02 24685228 24692188 Dod02g1835 02 24685228 24692188 ECH