Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g02212 ATGGCATGTTCTCCATCACCTATATCTGCATTCTCCTTTGCCAATTCATCACTTCCAAGACCCCGAACACCTTCTGTTCTAAATCCAAGAGCTATGGCCAAAGAGCTTTACTTTAACCACGATGGTTCAGCTACAAAGAAGCTTCTGGCAGGGGTGGACATGGTGGCAGAGCTGCTTGGAGTTACATTGGGTCCAAAGGGCAGAAATGTTGTGCTCCAGAATAAGTATGGACCTCCCAAGATCGTCAATGACGGAGAAACTGTTCTCAAAGAGATTGAATTGGAAGACCCATTGGAGAATGTTGGAGTTAAATTGGTAAGACAAGCAGGTGCAAAAACCAATGACCTTGCTGGTGATGGCTCCACTACATCCATTGTTCTTGCTCACGGCCTAATCACCGAGGGCACGAAGGTTATTGCAGCTGGAATGAATCCTGTTCAAATTGCTCGTGGAATTGAGAAGACAGCAGCAGCACTTGTTGCTGAACTCAATTTGATGTCAAGAGAAGTTGAGGATCATGAACTCACACATGTTGCTGCTGTCAGCGCCGGGAATGATTATGTTGTTGGAAACATGATTTCCGAGGCCCTGCATAAAGTAGGAAGGAAGGGAGTAGTGACAATTGAGAAAGGAAGGTGCACTGAGAATAGTCTAGAGATAGTGGAAGGAATGCAATTCGATCGCGGATATCTTTCGCCATACTTTGTAACTGATCGAAGAAAGATGACTGTTGAACTCCATAACTGCAAGTTGCTTTTGGTGGACAAAAAAATCACAAACCCGAAGGAGATGATTAACATATTGAACAGCGCTGTGATAGAGAAGTATCCAATTATGATAGTTGCAGAAAGCATTGAGCAAGAAGCTCTAGCGCCGATTATAAAAAATAAGCTCAAGGGTGTGCTAAAGGTAGCTGCAATCAAGGCTCCAGCATTCGGCGAGCGCAAAACGCACTATTTAGAAGACATTGCCATCTTGACAGGAGGTACTGTAATCAGAGAAGATATGGGTTTGACACTTGAAAAAGCTAGCAAGGATGTGCTAGGTTCTGCTACAAAAGTTGTCATAACAAAGAATTCTACCTTAATAGTTACCGATGGGACTACACGATCTGCTGTCGAAAAGAGGGTTGATCAAATTCGGAGCCTTGTTGAGAACACTGAAGAAAATTTCCAAAAGAAGATATTAAGTGAAAGGATAGCAAGATTATCAGGGGGAATTGCCATTCTTCAGGTAGGAGCACAAACACAAGTAGAGTTGAAGGACAAACAACTAAGAATTGAAGATGCTCTCAATGCAACCAAGGCAGCAATCGAGGAAGGTGTAGTGGTTGGTGGCGGCTGCAGCCTCTTAAGGCTATCCCAGAAGGTGGATAGCATAAAAAACCTCCTAGAAAATGAAGAACAAAAGATTGGAGCTGAGATCTTCAAAAGATCTTTGAGCTATCCTGCTAGAATGATAGCCAAAAATGCTGGTGTAAATGGCAACGTCGTCGTGGAAAAGGTTTTATCGGATGATAATGCGCATTTTGGCTATAATGCTTCGAAAGAACGTTATGAGGATCTTATGAAGGCCGGAATCATGGATCCAACAAAGGTAGTTAGATGTTGCATAGAGCATGCAGCATCTGTGGCGAAGGCATTTCTTACATCTAATGCTGTTGTCGTGGAACGCAAGGAAATATGGCGCATTCCCAGGATAAACCCCATGGCTGCTGCCTCAGGTTTAGGACCACTTGGGCTTTAA 1746 0.4353 MACSPSPISAFSFANSSLPRPRTPSVLNPRAMAKELYFNHDGSATKKLLAGVDMVAELLGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENVGVKLVRQAGAKTNDLAGDGSTTSIVLAHGLITEGTKVIAAGMNPVQIARGIEKTAAALVAELNLMSREVEDHELTHVAAVSAGNDYVVGNMISEALHKVGRKGVVTIEKGRCTENSLEIVEGMQFDRGYLSPYFVTDRRKMTVELHNCKLLLVDKKITNPKEMINILNSAVIEKYPIMIVAESIEQEALAPIIKNKLKGVLKVAAIKAPAFGERKTHYLEDIAILTGGTVIREDMGLTLEKASKDVLGSATKVVITKNSTLIVTDGTTRSAVEKRVDQIRSLVENTEENFQKKILSERIARLSGGIAILQVGAQTQVELKDKQLRIEDALNATKAAIEEGVVVGGGCSLLRLSQKVDSIKNLLENEEQKIGAEIFKRSLSYPARMIAKNAGVNGNVVVEKVLSDDNAHFGYNASKERYEDLMKAGIMDPTKVVRCCIEHAASVAKAFLTSNAVVVERKEIWRIPRINPMAAASGLGPLGL 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g02212 581 CDD GroEL 34 557 IPR001844 GO:0042026|GO:0140662
Aip05g02212 581 SUPERFAMILY GroEL apical domain-like 215 407 IPR027409 -
Aip05g02212 581 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 1 563 - -
Aip05g02212 581 PRINTS 60kDa chaperonin signature 59 85 IPR001844 GO:0042026|GO:0140662
Aip05g02212 581 PRINTS 60kDa chaperonin signature 115 142 IPR001844 GO:0042026|GO:0140662
Aip05g02212 581 PRINTS 60kDa chaperonin signature 299 322 IPR001844 GO:0042026|GO:0140662
Aip05g02212 581 PRINTS 60kDa chaperonin signature 381 406 IPR001844 GO:0042026|GO:0140662
Aip05g02212 581 PRINTS 60kDa chaperonin signature 429 450 IPR001844 GO:0042026|GO:0140662
Aip05g02212 581 PANTHER CHAPERONIN 60 SUBUNIT BETA 4, CHLOROPLASTIC 1 563 - -
Aip05g02212 581 SUPERFAMILY GroEL-intermediate domain like 173 225 IPR027410 -
Aip05g02212 581 Gene3D - 169 441 IPR027410 -
Aip05g02212 581 Pfam TCP-1/cpn60 chaperonin family 55 558 IPR002423 GO:0005524
Aip05g02212 581 TIGRFAM GroEL: chaperonin GroL 33 560 IPR001844 GO:0042026|GO:0140662
Aip05g02212 581 Coils Coil 450 470 - -
Aip05g02212 581 SUPERFAMILY GroEL equatorial domain-like 41 555 IPR027413 -
Aip05g02212 581 Coils Coil 370 390 - -
Aip05g02212 581 ProSitePatterns Chaperonins cpn60 signature. 436 447 IPR018370 GO:0005524|GO:0006457
Aip05g02212 581 Gene3D GroEL 223 404 IPR027409 -
Aip05g02212 581 Gene3D - 41 556 IPR027413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g02212 Aip-Chr5 102248694 102255240 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g02212 K04077 - gmx:100785937 907.131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g02212 05 102248694 102255240 Aip05g02212 05 102248694 102255240 ECH