Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1184 ATGGTGTCTGCACTTTCTTTCTCCAATTTAACACTGCCCAGAAGATCATTTTCAACTACAGCGTGGAACCCAAGAGCCATGGCCAAGGAGCTTTACTTCAACCATGATGGTTCAGCCACAAAGAAACTTCAGGCAGGGGTGGACATGGTGGCGGAACTGGTTGGTGTGACTTTAGGACCAAAAGGAAGGAATGTTGTGTTGCAGAACAAGTATGGGCCTCCCAAGATTGTTAACGATGGCGAGACTGTGCTCAAAGAGATTGAGCTGGAGGATCCATTGGAGAATGTTGGGGTGAAATTGGTTAGACAAGCTGGCGCAAAAACGAATCACCTTGCTGGTGATGGTTCCACTACATCTGTTATACTTGCACGAGGTCTAATTGCTGAGGGTGTGAAGGTAATTGCAGCAGGAATGAACCCCATTCAAATTTCTCGTGGGATTGAGAAGACTGCAATGGCCCTTGTTTCTGAACTCAAATTGATGTCGAGAGAGGTTGAGGATCATGAGCTTGCACATGTTGCTGCAGTTAGTGCTGGGAATGATTATACAGTGGGCAACATGATTTCTGATGCTATTCGACAGGTAGGAAGGAGGGGTGTGATCACAATTGAGAAAGGGAAATGTGCTGAAAATAGTCTGCAGATTGTAGAAGGAATGCAATTCGATCGTGGATACTTGTCCCCTTACTTTGTTACTGATCGACAAAAGATGATGGTGGAGTTCCATGATTGCAAGTTACTTTTGGTCGACAAAAAAATCACGAACCCGAAGGAGATGTTTAAAATATTGGACAATGCAGTTAAGGAGAAGTATCCAATTGTGATAGTTGCAGAGGGCATTGAGCAAGAAGCTCTGGCTCCGGTAATTAGAAACAAACTCAGGGGTGTGCTGAAGGCAGCTGCTATTAAGGCTCCTGCCTTTGGTGAGCGGAAGAGCCACTACTTAGATGACCTTGCTATCTTGACTGGAGGCACTGTAATTAGCGATGAGATGGGATTGACCCTGGAAAAGGCTGGCAAGGAGGTCTTGGGCACTGCTACTAAGGTGGTCATAACTAAGGATTCTACGTTAATAGTTACAGATGGGAGCACTCAACCAGCTGTTGAGAAGAGGGTTTCTCAGATTCGGGGGCTTGTTGAGAACACTGAAGAAAATTTCCAAAAGAAGATACTGAATGAAAGAATAGCAAGGTTATCAGGAGGAATTGCTATTCTTCAGGTCGGAGCTCAAACACAAGTTGAGCTGAAAGATAAACAATTGAGGATTGAAGATGCTGTGAATGCAACTAAGGCAGCTATTGAGGAAGGTGTTGTAGTTGGTGGTGGCTGTAGCCTTTTGCGACTATCTTTAAAAGTGGATGGCATCAAAGAACTTTTGGACAATGAAGAGCAGAAAATTGGAGCTGAGATCTTCAAAAGAGCTTTGACCTATCCTGCAAGACTGATTGCCAAAAATGCAGGTGTTAATGACAGTGTTGTAATAGAGAAGGTTTTATCTAATGATGATTTTCGATATGGTTATAATGCTGCAATAGACTGTTATGAGGATTTGATGGCTGCTGGAATTATGGATCCATCAAAGGTGGTTAGATGTTGTCTAGAGCATGCTGCTTCGGTTGCCAAAACCTTTTTGACATCAGACGCTGTTGTTGTTGACATTAAGGAATTAGACCTCATTCCAAGGAGAAAACCGATGCCACCAATGTCACCAATGCCACCAGTATCACCATTGCCATCCCCAGGTAACTCAGCCATTTCAAGGAGAAAACCAATGCCACGGATGCCACTATTACCACCACTGCCAACCTCAGGTATTCGACCAATTGGGCTTTAG 1833 0.4408 MVSALSFSNLTLPRRSFSTTAWNPRAMAKELYFNHDGSATKKLQAGVDMVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENVGVKLVRQAGAKTNHLAGDGSTTSVILARGLIAEGVKVIAAGMNPIQISRGIEKTAMALVSELKLMSREVEDHELAHVAAVSAGNDYTVGNMISDAIRQVGRRGVITIEKGKCAENSLQIVEGMQFDRGYLSPYFVTDRQKMMVEFHDCKLLLVDKKITNPKEMFKILDNAVKEKYPIVIVAEGIEQEALAPVIRNKLRGVLKAAAIKAPAFGERKSHYLDDLAILTGGTVISDEMGLTLEKAGKEVLGTATKVVITKDSTLIVTDGSTQPAVEKRVSQIRGLVENTEENFQKKILNERIARLSGGIAILQVGAQTQVELKDKQLRIEDAVNATKAAIEEGVVVGGGCSLLRLSLKVDGIKELLDNEEQKIGAEIFKRALTYPARLIAKNAGVNDSVVIEKVLSNDDFRYGYNAAIDCYEDLMAAGIMDPSKVVRCCLEHAASVAKTFLTSDAVVVDIKELDLIPRRKPMPPMSPMPPVSPLPSPGNSAISRRKPMPRMPLLPPLPTSGIRPIGL* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1184 610 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 23 555 IPR001844 GO:0042026|GO:0140662
Vvi1g1184 610 MobiDBLite consensus disorder prediction 561 610 - -
Vvi1g1184 610 SUPERFAMILY GroEL apical domain-like 210 402 IPR027409 -
Vvi1g1184 610 ProSitePatterns Chaperonins cpn60 signature. 431 442 IPR018370 GO:0005524|GO:0006457
Vvi1g1184 610 PRINTS 60kDa chaperonin signature 294 317 IPR001844 GO:0042026|GO:0140662
Vvi1g1184 610 PRINTS 60kDa chaperonin signature 424 445 IPR001844 GO:0042026|GO:0140662
Vvi1g1184 610 PRINTS 60kDa chaperonin signature 54 80 IPR001844 GO:0042026|GO:0140662
Vvi1g1184 610 PRINTS 60kDa chaperonin signature 376 401 IPR001844 GO:0042026|GO:0140662
Vvi1g1184 610 PRINTS 60kDa chaperonin signature 110 137 IPR001844 GO:0042026|GO:0140662
Vvi1g1184 610 NCBIfam chaperonin GroEL 28 555 IPR001844 GO:0042026|GO:0140662
Vvi1g1184 610 SUPERFAMILY GroEL-intermediate domain like 168 231 IPR027410 -
Vvi1g1184 610 CDD GroEL 29 552 IPR001844 GO:0042026|GO:0140662
Vvi1g1184 610 MobiDBLite consensus disorder prediction 563 579 - -
Vvi1g1184 610 Pfam TCP-1/cpn60 chaperonin family 50 553 IPR002423 GO:0005524
Vvi1g1184 610 Gene3D - 36 551 IPR027413 -
Vvi1g1184 610 Coils Coil 445 465 - -
Vvi1g1184 610 Gene3D GroEL 218 399 IPR027409 -
Vvi1g1184 610 SUPERFAMILY GroEL equatorial domain-like 36 550 IPR027413 -
Vvi1g1184 610 Gene3D - 164 436 IPR027410 -
Vvi1g1184 610 FunFam 60 kDa chaperonin 218 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1184 Vvi-Chr1 16384467 16390533 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1184 K04077 - vvi:100251252 1124.77