Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02357 ATggcatcttcttctccatcccCTTTCTCTGCTACACTCTCCTTTGCAAATCCATCATCAATGCCTAGACCCCGAGTTTCGCCTTTTTCTGTGCTAAACACAAGAGCTATGTCCAAAGATCTTTATTTCAACCATGATGGTTCAACCACAAAGAAACTTCTTGCAGGGGTGGACTTAGTGGCAGAACTGCTTGGTGTTACATTGGGTCCTAAGGGGAGAAATGTTGTGTTGCATAACAAGTATGGACCACCTAAGATTGTAAATGATGGAGAGACTGTTCTCAAAGagATTGAATTGGAAGATCCATTGGAGAATGTTGGAGTTAAATTGGTGAGACAAGCAGGTGCCAAAACCAATATCTTAGCTGGTGATGGCTCAACTACTTCTGTTATTCTTGCTCATGGCTTAATCAAAGAGGGAACAAAGGTTATTGCAGCTGGAATGAATCCTATCCAAATTGCTCGCGGGATTGAGAAGACAGCAAAAGCACTTGTTTCTGAACTTAGTTTGATGTCTAGAGAAGTTGAGGATCATGAACTTAAAGATGTTGCAGCAGTAAGCGCAGGGAACGATTATATAGTCGGAAACATGATTTCCGAGGCTTTGCATAAAGTAGGAAGAAAAGGAGTAGTGACAATTGAGAAAGGAAAGAGCACTGACAATAGTCTAGAGATAGTAGAAGGAATGCAATTTGATCGTGGATATATGTCTCCATACTTCGTCACAGATCGAAGAAAGATGACAGTTGAACTTCAGGAGTGCAAGTTGCTATTAGTTGACAAAAAGATCACAAATCCAAAGGAGTTACTTAACATATTGAATAGCGCGGTGAAAGAGAAGTATTCAATTTTAATAGTTGCAGAGGGAATTGAGCAGGATGCTCTTGCtccaattattaaaaataaacttaggGGTGTGCTTAAGGTTGCTGCCATTAAGGCTCCTGCGTTTGGTGAACGCAAGACTCACTATTTAGAAGATATTGCCATCTTGACTGGAGGTACCGTAATAAGAGAAGATATGGGTTTCACCTTAGAAAAAGCTAGTaaggatgtgtttggttcagCTACTAAGGTTATCGTAACAAGAGACTCTACCTTAGTAGTCACTGATGGCAGTACTAGAGAAGCTGTTGAAAAGAGGGTGTCTCAACTAAAGACCCTTATTGAGAATACTGAAGAAAATTTCCAAAAGAATATAATAAACGAAAGGATAGCAAGATTATCAGGGGGCATTGCCATTCTTCAGGTAGGAGCACAAACACAAGTAGAGTTGAAGGATAAACAACTAAGAATGGAGGATGCCTTAAATGCAACCAAGTCGGCTATTGAGGAAGGTGTAGTAGTCGGTGGTGGATGTAGCCTTTTAAGGCTATCTCAAAAGGTGGATAGCATAAAAAATCTCCTTGACAATGAAGAGCAAAAGATTGGTGCTGAAATCTTCAAAAGAGCTTTGAGCTATCCTACTAGAAAGATAGCAAAAAATGCTGGTGTAAATGGCAATGTTGTTATAAATAAGGTTTTATCAGATGATAATATGAATTTTGGTTACAATGCTGCTACAGACTGTTATGAGGATCTCATGAAGGCTAGAATCATAGATCCAACAAAGGTAGTTAGGTGTTGTATAGAGCATGCAGCTTCTGTGGCCAAGACATTTCTAACAGCAAACGCTGTTGTGATCGACCGCATGGAACTACAACGACCATTACCACGTAGAAAGCCCATGGCTATGCCTAGAAATCCCATGGCTATGCCGAGAAATCCCATGACTAGTTCAGGTTTAGGTCCACTTGGATTTTAA 1803 0.3882 MASSSPSPFSATLSFANPSSMPRPRVSPFSVLNTRAMSKDLYFNHDGSTTKKLLAGVDLVAELLGVTLGPKGRNVVLHNKYGPPKIVNDGETVLKEIELEDPLENVGVKLVRQAGAKTNILAGDGSTTSVILAHGLIKEGTKVIAAGMNPIQIARGIEKTAKALVSELSLMSREVEDHELKDVAAVSAGNDYIVGNMISEALHKVGRKGVVTIEKGKSTDNSLEIVEGMQFDRGYMSPYFVTDRRKMTVELQECKLLLVDKKITNPKELLNILNSAVKEKYSILIVAEGIEQDALAPIIKNKLRGVLKVAAIKAPAFGERKTHYLEDIAILTGGTVIREDMGFTLEKASKDVFGSATKVIVTRDSTLVVTDGSTREAVEKRVSQLKTLIENTEENFQKNIINERIARLSGGIAILQVGAQTQVELKDKQLRMEDALNATKSAIEEGVVVGGGCSLLRLSQKVDSIKNLLDNEEQKIGAEIFKRALSYPTRKIAKNAGVNGNVVINKVLSDDNMNFGYNAATDCYEDLMKARIIDPTKVVRCCIEHAASVAKTFLTANAVVIDRMELQRPLPRRKPMAMPRNPMAMPRNPMTSSGLGPLGF 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02357 600 SUPERFAMILY GroEL-intermediate domain like 178 231 IPR027410 -
Tsu05g02357 600 Coils Coil 455 475 - -
Tsu05g02357 600 Coils Coil 375 395 - -
Tsu05g02357 600 MobiDBLite consensus disorder prediction 573 600 - -
Tsu05g02357 600 Gene3D - 174 446 IPR027410 -
Tsu05g02357 600 Gene3D - 49 560 IPR027413 -
Tsu05g02357 600 MobiDBLite consensus disorder prediction 1 24 - -
Tsu05g02357 600 Pfam TCP-1/cpn60 chaperonin family 60 562 IPR002423 GO:0005524
Tsu05g02357 600 PANTHER CHAPERONIN 60 SUBUNIT BETA 4, CHLOROPLASTIC 9 572 - -
Tsu05g02357 600 Gene3D GroEL 228 409 IPR027409 -
Tsu05g02357 600 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 9 572 - -
Tsu05g02357 600 SUPERFAMILY GroEL apical domain-like 221 412 IPR027409 -
Tsu05g02357 600 SUPERFAMILY GroEL equatorial domain-like 47 560 IPR027413 -
Tsu05g02357 600 TIGRFAM GroEL: chaperonin GroL 39 564 IPR001844 GO:0042026|GO:0140662
Tsu05g02357 600 CDD GroEL 39 562 IPR001844 GO:0042026|GO:0140662
Tsu05g02357 600 PRINTS 60kDa chaperonin signature 304 327 IPR001844 GO:0042026|GO:0140662
Tsu05g02357 600 PRINTS 60kDa chaperonin signature 120 147 IPR001844 GO:0042026|GO:0140662
Tsu05g02357 600 PRINTS 60kDa chaperonin signature 64 90 IPR001844 GO:0042026|GO:0140662
Tsu05g02357 600 PRINTS 60kDa chaperonin signature 434 455 IPR001844 GO:0042026|GO:0140662
Tsu05g02357 600 PRINTS 60kDa chaperonin signature 386 411 IPR001844 GO:0042026|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02357 Tsu-Chr5 31254155 31259289 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02357 K04077 - gmx:100785937 928.317
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02357 05 31254155 31259289 Tsu05g02357 05 31254155 31259289 ECH