Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0658 ATGACATGTTCTCCATCTTATATATCTGCATTCTCCTTCACCAATCCATCATTTCCCAAACCTAGAACTCCACCTTCTGTTCCAAACTCCAGAGTGGCCAAAGATCTTTACTTCAACCATGATGGCTTGGTCACAAAGAAGCTTTTGGCAGGAGTGGATATGGTGGCAAAACTTGTTGGAGTTACTTTGGGTCCAAAGGGAAGAAATGTTGTGCTGCATAATAAGTATGGACCACCCAAGATAGTAAATGATGGAGAAACTGTTCTCAAAGAGATTGAATTGGAAGATCCATTAGAGAATGTTGGAGTTAAATTGGTGAGACAAGCTGGTGCAAAAACCAATGACCTTGCTGGTGATGGTTCAACGACATCTATTATTCTTGCCCATGGCCTAATCACAGAAGGGATAAAGGTTATTACAGCTGGAATGAATCCGGTTCAAATTGCTCGCGGGATTGAGAAGACTGCAATAGCCCTTGTTTCTGAACTGACTTTGATGTCTAGAGAAGTTGAGGATCATGAACTTACAGATGTTGCTGCAGTCAGTGCCGGGAATGATTATACAGTCGGAAACATGATTTCTGATGCTCTACATCAAGTAGGCAAGGGCGGCGTAGTGACAATTGAAAAAGGAAGGGGTATTGAGAATAGTCTAGAGATTGTAGAAGGAATGCAATTTGATCGCGGATATCTGTCTCCATACTTTGTCACTGACCGAAGAAAGATGACCGTTGAACTCAACGACTGCAAGTTGCTTTTGGTAGACAAAAAAATCACAAACCCAAAGGAGATCTTTAACCTATTAAACAGTGCCGTGAAAGAGAAGTTTCCAATTGTGATAGTTGCAGAAGGTATTGAACAAGAAGCTCTAGCTCCAGTTATTAAAAACAAACTCATGGGTGTGCTGAAGGTAGCTGCTATTAAGGCTCCAGAATTTGGTGAGCGAAAAACTCACTACTTAGAAGATATTGCCATCTTGACCGGAGGTACTGTAATCCGAGATGATATGGGTTTAACACTAGAAAAGGCTAGAAATTATGTTCTAGGTTCTGCTACTAAGGTTGTCATAACAAAGAATTCTACCTTAATAGTTACAGATGGGAGCACTCGAGCCGCTGTTGAGAAGAGGGTTTATCAGCTTAGGAGACTTGTTGAGAATACAGAAGAAAATTTCCAAAAGAAAATACTGAATGAAAGAATAGCAAGATTATCTGGGGGCATTGCCATTCTTAAGGTAGGAGCACAGACACAAGTGGAGTTGAAGGATAAACAATTAAGAGTTGAAGATGCTCTAAATGCAACCAAGGCAGCAATTGAAGAAGGTGTTGTAGTTGGTGGCGGCTGTAGCCTTTTAAGGCTATCCAAGAAGGTGGATGGCATCAAAAGACTCCTAGATAATGAAGAACAAAAAATTGGAGCTGAGATCTTCAGAAGAGCTTTGAGCTATCCTGCAAGATTGATAGCAAAAAATGCTGGTGTCAATGGCAATGTTGTCATAGATAAGGTTTTATCAGACGATAACGTGAATTTTGGATACAATGCTTCTATAGACTGTTATGAGGATCTCATGGAAGCTGGAATCATGGATCCAACAAAGGTAGTAAGATGTTGTATAGAGCATGCAGCATCTGTGACCAAGGCATTTCTGACTTCTAATGCTGTTGTCGTCGACCGGATGGAATTACACCCGATTCCAAGAAGAAAAAGGCCCATGACTACTACCTCAGGTACTCAAATTCCTGGTATGTCAAAAGATCTTTCATTGATCCAAGCAATCAAGGGGAACCAAGTAAAGAGCACTAGAAATACAAGGCTAACTTGA 1821 0.408 MTCSPSYISAFSFTNPSFPKPRTPPSVPNSRVAKDLYFNHDGLVTKKLLAGVDMVAKLVGVTLGPKGRNVVLHNKYGPPKIVNDGETVLKEIELEDPLENVGVKLVRQAGAKTNDLAGDGSTTSIILAHGLITEGIKVITAGMNPVQIARGIEKTAIALVSELTLMSREVEDHELTDVAAVSAGNDYTVGNMISDALHQVGKGGVVTIEKGRGIENSLEIVEGMQFDRGYLSPYFVTDRRKMTVELNDCKLLLVDKKITNPKEIFNLLNSAVKEKFPIVIVAEGIEQEALAPVIKNKLMGVLKVAAIKAPEFGERKTHYLEDIAILTGGTVIRDDMGLTLEKARNYVLGSATKVVITKNSTLIVTDGSTRAAVEKRVYQLRRLVENTEENFQKKILNERIARLSGGIAILKVGAQTQVELKDKQLRVEDALNATKAAIEEGVVVGGGCSLLRLSKKVDGIKRLLDNEEQKIGAEIFRRALSYPARLIAKNAGVNGNVVIDKVLSDDNVNFGYNASIDCYEDLMEAGIMDPTKVVRCCIEHAASVTKAFLTSNAVVVDRMELHPIPRRKRPMTTTSGTQIPGMSKDLSLIQAIKGNQVKSTRNTRLT 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0658 606 CDD GroEL 34 557 IPR001844 GO:0042026|GO:0140662
Lal22g0658 606 Pfam TCP-1/cpn60 chaperonin family 55 558 IPR002423 GO:0005524
Lal22g0658 606 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 1 562 - -
Lal22g0658 606 Coils Coil 450 470 - -
Lal22g0658 606 SUPERFAMILY GroEL equatorial domain-like 46 555 IPR027413 -
Lal22g0658 606 Coils Coil 370 390 - -
Lal22g0658 606 Gene3D - 45 556 IPR027413 -
Lal22g0658 606 PRINTS 60kDa chaperonin signature 59 85 IPR001844 GO:0042026|GO:0140662
Lal22g0658 606 PRINTS 60kDa chaperonin signature 115 142 IPR001844 GO:0042026|GO:0140662
Lal22g0658 606 PRINTS 60kDa chaperonin signature 299 322 IPR001844 GO:0042026|GO:0140662
Lal22g0658 606 PRINTS 60kDa chaperonin signature 381 406 IPR001844 GO:0042026|GO:0140662
Lal22g0658 606 PRINTS 60kDa chaperonin signature 429 450 IPR001844 GO:0042026|GO:0140662
Lal22g0658 606 SUPERFAMILY GroEL apical domain-like 215 407 IPR027409 -
Lal22g0658 606 SUPERFAMILY GroEL-intermediate domain like 173 225 IPR027410 -
Lal22g0658 606 Gene3D GroEL 223 404 IPR027409 -
Lal22g0658 606 TIGRFAM GroEL: chaperonin GroL 33 559 IPR001844 GO:0042026|GO:0140662
Lal22g0658 606 Gene3D - 169 441 IPR027410 -
Lal22g0658 606 PANTHER CHAPERONIN 60 SUBUNIT BETA 4, CHLOROPLASTIC 1 562 - -
Lal22g0658 606 ProSitePatterns Chaperonins cpn60 signature. 436 447 IPR018370 GO:0005524|GO:0006457
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0658 Lal-Chr22 4670236 4675102 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0658 K04077 - gmx:100796464 901.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0658 22 4670236 4675102 Lal22g0658 22 4670236 4675102 ECH