Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g1145 ATGGCATGTTCTCCATCACCTATATCTGCATTCTCCTTTGCCAATTCATCACTTCCAAGACCCCGAACACCTTCTGTTCTAAATCCAAGAGCTATGGCCAAAGAGCTTTACTTTAACCACGATGGTTCAGCTACAAAGAAGCTTCTGGCAGGGGTGGACATGGTGGCAGAGCTGCTTGGAGTTACATTGGGTCCAAAGGGCAGAAATGTTGTGCTCCAGAATAAGTATGGACCTCCCAAGATCGTCAATGACGGAGAAACTGTTCTCAAAGAGATTGAATTGGAAGACCCATTGGAGAATGTTGGAGTTAAATTGGTAAGACAAGCAGGTGCAAAAACCAATGACCTTGCTGGTGATGGCTCCACTACATCCATTGTTCTTGCTCACGGCCTAATCACCGAGGGCACGAAGGTTATTGCAGCTGGAATGAATCCTGTTCAAATTGCTCGTGGAATTGAGAAGACAGCAGCAGCACTTGTTGCTGAACTCAATTTGATGTCAAGAGAAGTTGAGGATCATGAACTCACACATGTTGCAGCTGTCAGCGCCGGGAATGATTATGTTATTGGAAACATGATTTCCGAGGCCCTGCATAAAGTAGGAAGGAAGGGAGTAGTGACAATTGAGAAAGGAAGGTGCACTGAGAATAGTCTAGAGATAGTGGAAGGAATGCAATTCGATCGCGGATATCTTTCGCCATACTTTGTAACTGATCGAAGAAAGATGACTGTTGAACTCCATAACTGCAAGTTGCTTTTGGTGGACAAAAAAATCACAAACCCAAAGGAGATGATTAAAATATTGAACAGTGCTGTGATAGAGAAGTATCCAATTATGATAGTTGCAGAAGGCATTGAGCAAGAAGCTCTAGCACCGATTATAAAAAATAAGCTCAAGGGTGTGCTAAAGGTAGCTGCAATCAAGGCTCCAGCATTCGGGGAGCGCAAAACGCACTATTTAGAAGACATTGCCATCTTGACAGGAGGTACTGTAATCAGAGAAGATATGGGTTTGACACTTGAAAAAGCTAGCAAGGATGTGCTAGGTTCTGCTACAAAAGTTGTCATAACAAAGAATTCTACCTTAATAGTTACTGATGGGTCTACACGATCTGCTGTCGAAAAGAGGGTTGATCAAATTCGGAGCCTTGTTGAGAACACTGAAGAAAATTTCCAAAAGAAGATATTAAGTGAAAGGATAGCAAGATTATCAGGGGGAATTGCCATTCTTCAGGTAGGAGCACAAACACAAGTAGAGTTGAAGGACAAACAACTAAGAATTGAAGATGCTCTCAATGCAACCAAGGCAGCAATCGAGGAAGGTGTAGTGGTTGGTGGCGGCTGCAGCCTCTTAAGGCTATCCCAGAAGGTGGATAGCATAAAAAACCTCCTAGAAAATGAAGAGCAAAAGATTGGAGCTGAGATCTTCAAAAGATCTTTGAGCTATCCTGCTAGAATGATAGCCAAAAATGCTGGTGTAAATGGCAACGTCGTCGTGGAAAAGGTTTTATCGGATGATAATGCGCATTTTGGCTATAATGCTTCGAAAGAACGTTATGAGGATCTTATGAAGGCCGGAATCATGGATCCAACAAAGGTAGTTAGATGTTGCATAGAGCATGCAGCATCTGTGGCGAAGGCATTTCTTACATCTAATGCTGTTGTCGTGGAACGCAAGGAAATATGGCGCATTCCCAGGATAAACCCCATGGCTGCTGCCTCAGGTTTAGGACCACTTGGGCTTTAA 1746 0.433 MACSPSPISAFSFANSSLPRPRTPSVLNPRAMAKELYFNHDGSATKKLLAGVDMVAELLGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENVGVKLVRQAGAKTNDLAGDGSTTSIVLAHGLITEGTKVIAAGMNPVQIARGIEKTAAALVAELNLMSREVEDHELTHVAAVSAGNDYVIGNMISEALHKVGRKGVVTIEKGRCTENSLEIVEGMQFDRGYLSPYFVTDRRKMTVELHNCKLLLVDKKITNPKEMIKILNSAVIEKYPIMIVAEGIEQEALAPIIKNKLKGVLKVAAIKAPAFGERKTHYLEDIAILTGGTVIREDMGLTLEKASKDVLGSATKVVITKNSTLIVTDGSTRSAVEKRVDQIRSLVENTEENFQKKILSERIARLSGGIAILQVGAQTQVELKDKQLRIEDALNATKAAIEEGVVVGGGCSLLRLSQKVDSIKNLLENEEQKIGAEIFKRSLSYPARMIAKNAGVNGNVVVEKVLSDDNAHFGYNASKERYEDLMKAGIMDPTKVVRCCIEHAASVAKAFLTSNAVVVERKEIWRIPRINPMAAASGLGPLGL* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g1145 581 CDD GroEL 34 557 IPR001844 GO:0042026|GO:0140662
Amo15g1145 581 Gene3D - 169 441 IPR027410 -
Amo15g1145 581 PANTHER CHAPERONIN 60 SUBUNIT BETA 4, CHLOROPLASTIC 1 563 - -
Amo15g1145 581 SUPERFAMILY GroEL apical domain-like 215 407 IPR027409 -
Amo15g1145 581 PRINTS 60kDa chaperonin signature 59 85 IPR001844 GO:0042026|GO:0140662
Amo15g1145 581 PRINTS 60kDa chaperonin signature 115 142 IPR001844 GO:0042026|GO:0140662
Amo15g1145 581 PRINTS 60kDa chaperonin signature 299 322 IPR001844 GO:0042026|GO:0140662
Amo15g1145 581 PRINTS 60kDa chaperonin signature 381 406 IPR001844 GO:0042026|GO:0140662
Amo15g1145 581 PRINTS 60kDa chaperonin signature 429 450 IPR001844 GO:0042026|GO:0140662
Amo15g1145 581 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 1 563 - -
Amo15g1145 581 SUPERFAMILY GroEL-intermediate domain like 172 227 IPR027410 -
Amo15g1145 581 Coils Coil 450 470 - -
Amo15g1145 581 Gene3D - 41 556 IPR027413 -
Amo15g1145 581 Coils Coil 370 390 - -
Amo15g1145 581 TIGRFAM GroEL: chaperonin GroL 33 560 IPR001844 GO:0042026|GO:0140662
Amo15g1145 581 Gene3D GroEL 223 404 IPR027409 -
Amo15g1145 581 Pfam TCP-1/cpn60 chaperonin family 55 558 IPR002423 GO:0005524
Amo15g1145 581 ProSitePatterns Chaperonins cpn60 signature. 436 447 IPR018370 GO:0005524|GO:0006457
Amo15g1145 581 SUPERFAMILY GroEL equatorial domain-like 41 555 IPR027413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g1145 Amo-Chr15 90430686 90437675 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g1145 K04077 - gmx:100785937 907.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo15g1145 15 90430686 90437675 Amo15g1145 15 90430686 90437675 ECH