Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1900 ATGACATCTTCTCCATCACCTATATTTGCTACATTATCATTTGCTAATCCATCATCAATTCCAAAACACCGAAATTCATCTTCTTTTGTATTAAACACAAAAGCTATGTCCAAAGATCTTTATTTCAACCATGATGGTTCAACCACAAAGAAGCTTCTTGCAGGGGTGGACTTGGTGGCAGAGCTGCTTGGTGTTACATTGGGTCCTAAGGGAAGAAATGTTGTGTTGCACAACAAGTATGGGCCACCCAGGATAGTAAATGATGGAGAAACTGTTCTGAAAGAGATTGAATTGGAAGATCCATTGGAGAATGTTGGGGTTAAATTGGTGAGACAAGCTGGTGCAAAAACCAATATCTTAGTTGGTGATGGCTCAACTACATCTGTTGTTCTTGCTCATGGCTTAATCAAAGAGGGAATGAAGGTTATTGCAGCTGGAATGAATCCTGTCCAAATTGCTCGTGGGATTGAGAAAACAGCAATAGCACTTGTTAATGAACTTAGTTTGATGTCTAGAGACGTTGAGGATCATGAACTTAAATATGTTGCAGAAGTCAGCGCAGGGAACGATTATGTTGTCGGAAACATGATTTCTGAGGCTTTGCATAAAGTAGGAAGAAAAGGAGTAGTGACAATTGAAAAAGGCAAAAGCATCGAGAATAGTCTAGAGATTGTAGAAGGAATGCAATTCGATCGCGGTTATCTGTCTCCCTACTTCGTCACCGATCGAAGAAAGATGACAGTAGATCTTCACAACTGCAAGTTGCTTTTAGTTGACAAAAAGATCACAAATCCAAAAGAGCTTCTGAACATATTGAATAGTGCAGTGAAAGAGAAATTTCCAATTTTGATAGTTGCAGAGGGAATTGAGCAGGATGCTCTTGCTCCAATTATTAAAAATAAACTTAGGGGTGTGCTTAAGGTTGCTGCTATTAAGGCTCCTGCTTTCGGGGAACGCAAGAGTCACTACTTAGAAGATATTGCCATCTTGACTGGAGGTACTGTAATAAGAGAAGACATGGGTTTCACCTTAGAAAAAGCCAGCACGGATGTGCTTGGTTCCGCTGCCAAAGTTGTCATTACAAAAGATTCTACCCTACTAGTCACTGATGGGAGTACTAGAGAAGCAATTGAAAAGAGGGTTAATCAAATAAAGATCCTTGTTGAGAATACTGAAGAAAATTTTCAAAAGAAGATATTGAATGAAAGGATAGCAAGATTATCAGGGGGCATTGCCATTCTTAAGGTAGGAGCACAAACACAAGTAGAGTTGAAGGATAAACAATTAAGAATAGAAGATGCCTTAAATGCAACCAAGGCAGCAATTGAGGAAGGTGTAGTAGTTGGTGGTGGCTGTAGCCTTCTAAGACTATCCAAGAAGGTGGATAGCATAAAAATTCTCCTGGACAATGAAGAGCAAAAGATTGGAGCTGAAATCTTCAAAAGAGCTTTGAGCTATCCTACTAAAATGATAGCGAAAAATGCCGGTGTAAATGGCAATGTTGTCATAGATAAGGTTTTAGCAGATGATAACATGAATTTTGGTTACAATGCTGCTAGAGACTGTTATGAGGATCTCATGAAGGCTAGAATCATGGATCCAACAAAGGTTGTTAGGTGTTGTATAGAGCATGCAGCTTCTGTGGCAAAGACATTTCTAACATCAAATGCTGTTGTGATTGACCGCATGGAACTACAACAACCATTACAACGTAGAAAGCCCATGACTATGCCTAGAAAGCCCATGGCTATGCCTAGAATGCCCATGACTAATTCAGGTTTAGGACCAATTGGCTTTTAA 1800 0.3961 MTSSPSPIFATLSFANPSSIPKHRNSSSFVLNTKAMSKDLYFNHDGSTTKKLLAGVDLVAELLGVTLGPKGRNVVLHNKYGPPRIVNDGETVLKEIELEDPLENVGVKLVRQAGAKTNILVGDGSTTSVVLAHGLIKEGMKVIAAGMNPVQIARGIEKTAIALVNELSLMSRDVEDHELKYVAEVSAGNDYVVGNMISEALHKVGRKGVVTIEKGKSIENSLEIVEGMQFDRGYLSPYFVTDRRKMTVDLHNCKLLLVDKKITNPKELLNILNSAVKEKFPILIVAEGIEQDALAPIIKNKLRGVLKVAAIKAPAFGERKSHYLEDIAILTGGTVIREDMGFTLEKASTDVLGSAAKVVITKDSTLLVTDGSTREAIEKRVNQIKILVENTEENFQKKILNERIARLSGGIAILKVGAQTQVELKDKQLRIEDALNATKAAIEEGVVVGGGCSLLRLSKKVDSIKILLDNEEQKIGAEIFKRALSYPTKMIAKNAGVNGNVVIDKVLADDNMNFGYNAARDCYEDLMKARIMDPTKVVRCCIEHAASVAKTFLTSNAVVIDRMELQQPLQRRKPMTMPRKPMAMPRMPMTNSGLGPIGF* 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1900 599 CDD GroEL 38 561 IPR001844 GO:0042026|GO:0140662
Mtr5g1900 599 TIGRFAM GroEL: chaperonin GroL 38 563 IPR001844 GO:0042026|GO:0140662
Mtr5g1900 599 PRINTS 60kDa chaperonin signature 63 89 IPR001844 GO:0042026|GO:0140662
Mtr5g1900 599 PRINTS 60kDa chaperonin signature 119 146 IPR001844 GO:0042026|GO:0140662
Mtr5g1900 599 PRINTS 60kDa chaperonin signature 303 326 IPR001844 GO:0042026|GO:0140662
Mtr5g1900 599 PRINTS 60kDa chaperonin signature 385 410 IPR001844 GO:0042026|GO:0140662
Mtr5g1900 599 PRINTS 60kDa chaperonin signature 433 454 IPR001844 GO:0042026|GO:0140662
Mtr5g1900 599 SUPERFAMILY GroEL apical domain-like 219 411 IPR027409 -
Mtr5g1900 599 Coils Coil 454 474 - -
Mtr5g1900 599 Coils Coil 374 394 - -
Mtr5g1900 599 Pfam TCP-1/cpn60 chaperonin family 59 561 IPR002423 GO:0005524
Mtr5g1900 599 ProSitePatterns Chaperonins cpn60 signature. 440 451 IPR018370 GO:0005524|GO:0006457
Mtr5g1900 599 SUPERFAMILY GroEL-intermediate domain like 178 229 IPR027410 -
Mtr5g1900 599 Gene3D GroEL 227 408 IPR027409 -
Mtr5g1900 599 PANTHER CHAPERONIN 60 SUBUNIT BETA 4, CHLOROPLASTIC 9 576 - -
Mtr5g1900 599 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 9 576 - -
Mtr5g1900 599 Gene3D - 173 445 IPR027410 -
Mtr5g1900 599 Gene3D - 48 559 IPR027413 -
Mtr5g1900 599 SUPERFAMILY GroEL equatorial domain-like 46 559 IPR027413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1900 Mtr-Chr5 22127780 22143353 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1900 K04077 - gmx:100785937 909.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1900 5 22127780 22143353 Mtr5g1900 5 22127780 22143353 ECH