Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1721 ATGAAGTCCTCGCTCAGCAAGTTGAGGAAAATTGCACTTCACAAGAGCACCGTTGCCAAAGAAAAGAACGAGTTTCAACCTTCACCCGTCTTCGACGAGCTTGCTCTCGCTGCCAAGGACATGCAAGAGATGAGAGATTGCTATGATAGCCTGCTTGCTGCGGCTGCTGCTACGGAAAACAGTGCTTACGAATTTGCTGAGTCACTGCAGGAAATGGGTACTTGTCTATTGGAGAAAACTTCCTTAAATGATGATGAAGAAAATGGTAAAGTTTTGGGGATGCTTGGAAATGTGCAGCTTGAACTTCAGAAACTTGTTGATAGCTATCGTTCTCACGTAGCACTCACAATAACCAAACCATCAGAGTCTCTGCTTAATGAACTAAGAACTGTTGAGGACATGAAGCGGCAATGTGATGAGAAAAGAGACGTATATGAATATATGATTGCCCAACAGAAAGAGAAAGGAAGGTCAAAAAGTGGTAAAGGTGAAAGTATCACTTTACAGCAGTTGCAAGCAGCTCATGATGAATATAAAGAGGAAGCAACACTTTGTGCTTTTCGGTTAAAATCCTTGAAGCAAGGCCAGTCACGCAGTCTCCTAACACAAGCAGCTCGTCACTATGCTGCGCAGTTGAACTTCTTTCGGAAGGGACTTAAATCACTGGAGGCTGTTGAGCCACATGTCAGAATGGTTGCAGGACACCAACATATTGATTACCAATTTAGTGGCCTTGAAGATGATGACGGTGAAGATTGTTCTGAAGATGCTGGGAATGACGATGAGATCGTTGAAGGCACTGAGTTAAGTTTTAACTACAGATCAAATAAGCAAGGGCCTTATACTGCTTCCACATCGCCAAACTCAGCAGAGGTGGAAGAATCAAGACTGTCATATGTTCGAGCCTCGACCGCAGAAACTGCAGAGATAGATAAGAACCAAGGAGATTTTAAATTCTCAACTAGAGATCGTAGAGTCAGCAGCTATTCAGCTCCAATATTTGCTGAAAAGAAATTTGACCCAGCTGAGAAAGTAAGATTACTTTTGTCATCATCTGCAGCAAAGCCTAATGCTTATGTACTTCCTACCCCTGTCAACATCAAAGAAACAAAAACTAGCTCAGCCCCCCGCCTAAGTGCAAGTGGATCTTCACATAATTTGTGGCATTCTTCCCCTTTGGATGAAAAAAAAAACGAGAAAGATCTTGTTGATGGTAAATTGTCAGAACCAGCCATCCCTAGAGCTCACTCTATTCTCAAAGAAAGCAACAGTGATAACACATCCATCCAGTTACCACGCCCTTCAGCTGAGGGACTGTCACTTCCACAATTTGATATTTTCAATGCTTCTGATAGTAAGAAAACATTAAGACAAGCTTTTTCAGGTCCATTGACTAATAAACCACTGTCAGTAAAACCTGTTTCAGGGGCTTTTCCACGTTTACCAATGCCCCAGCCTACCTCTCCAAAAGCATCTCCTGGTACTTCACCTCCCCCTGTTTCCTCACCTAGGATAAGTGAGTTACATGAGCTTCCTAGACCTCCTGGTGATCAATCCAGCAAGCCAATGAAATCTTCTCGCGTAGGCCACTCCGCTCCATTAGTATTCAGAAATCCAGATCATCCCGCAGCTAATAAGTTTCCTTCAGTTGTATCGAGTGGAGCATCTCCACTTCCAACTCCACCTATAATGGTCTCTCGGAGTTTTTCTATACCCTCAAGTAATCAGAGAGCTATGGCATTGAATGTTACTAATACTAAGTATTTGGATACACGCCAAATTCCAGAGAAAGTTGAAGTAGCTGCATCACCTCCGCTAACACCTATATCACAGAGAGCATCAAGTATATCTGACCTGGCTACTCACTCTAGTGAAATCCAAGTGAATGCAGGTAGGAGCTAA 1902 0.4306 MKSSLSKLRKIALHKSTVAKEKNEFQPSPVFDELALAAKDMQEMRDCYDSLLAAAAATENSAYEFAESLQEMGTCLLEKTSLNDDEENGKVLGMLGNVQLELQKLVDSYRSHVALTITKPSESLLNELRTVEDMKRQCDEKRDVYEYMIAQQKEKGRSKSGKGESITLQQLQAAHDEYKEEATLCAFRLKSLKQGQSRSLLTQAARHYAAQLNFFRKGLKSLEAVEPHVRMVAGHQHIDYQFSGLEDDDGEDCSEDAGNDDEIVEGTELSFNYRSNKQGPYTASTSPNSAEVEESRLSYVRASTAETAEIDKNQGDFKFSTRDRRVSSYSAPIFAEKKFDPAEKVRLLLSSSAAKPNAYVLPTPVNIKETKTSSAPRLSASGSSHNLWHSSPLDEKKNEKDLVDGKLSEPAIPRAHSILKESNSDNTSIQLPRPSAEGLSLPQFDIFNASDSKKTLRQAFSGPLTNKPLSVKPVSGAFPRLPMPQPTSPKASPGTSPPPVSSPRISELHELPRPPGDQSSKPMKSSRVGHSAPLVFRNPDHPAANKFPSVVSSGASPLPTPPIMVSRSFSIPSSNQRAMALNVTNTKYLDTRQIPEKVEVAASPPLTPISQRASSISDLATHSSEIQVNAGRS* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1721 633 CDD BAR 40 228 - -
Lja1g1721 633 MobiDBLite consensus disorder prediction 607 633 - -
Lja1g1721 633 MobiDBLite consensus disorder prediction 370 403 - -
Lja1g1721 633 Gene3D Arfaptin homology (AH) domain/BAR domain 28 241 IPR027267 -
Lja1g1721 633 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN-LIKE 1 617 IPR037488 -
Lja1g1721 633 MobiDBLite consensus disorder prediction 419 434 - -
Lja1g1721 633 MobiDBLite consensus disorder prediction 370 389 - -
Lja1g1721 633 MobiDBLite consensus disorder prediction 416 437 - -
Lja1g1721 633 MobiDBLite consensus disorder prediction 605 633 - -
Lja1g1721 633 MobiDBLite consensus disorder prediction 461 554 - -
Lja1g1721 633 MobiDBLite consensus disorder prediction 273 292 - -
Lja1g1721 633 SUPERFAMILY BAR/IMD domain-like 32 230 IPR027267 -
Lja1g1721 633 Pfam BAR domain 54 228 IPR004148 GO:0005515|GO:0005737
Lja1g1721 633 MobiDBLite consensus disorder prediction 479 500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1721 Lja-Chr1 19140219 19146732 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1721 - - lja:Lj1g3v3892320.3 967.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1721 1 19140219 19146732 Lja1g1721 1 19140219 19146732 ECH