Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu1g0831 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa6g02772 . . . . . . . . . . . . . . . . . . . . . Tpr1g1689 . . . . . . . .
Pvu1g0832 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa6g02775 . . . . . . . . . . . . . . . . . . . . . Tpr1g1687 . . . . . . . .
Pvu1g0833 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa6g02776 . . . . . . . . . . . . . . . . . . . . . Tpr1g1686 . . . . . . . .
Pvu1g0834 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa6g02778 . . . . . . . . . . . . . . . . . . Spst8g01807 . . Tpr1g1684 . . . . . . . .
Pvu1g0835 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa6g02780 . . . . . . . . . . Phac7g01787 . . Psa6g1292 . . . . . . . Tpr1g1681 . . . . . . . .
Pvu1g0836 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa6g02781 . . . . . . . . . . . . . Psa6g1247 . . . . . . . Tpr1g1680 . . . . . . . .
Pvu1g0837 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g0838 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa6g02784 . . . . . . . . . . . . . . . . . . . . . Tpr1g1674 . . . . . . . .
Pvu1g0839 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa6g02785 . . . . . . . . . . . . . Psa6g1240 . . . . . . . Tpr1g1673 . . . . . . . .
Pvu1g0840 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa6g02786 . . . . . . . . . . Phac7g01790 . . Psa6g1238 . . . . . . . Tpr1g1672 . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Spst Spst8g01807 Chr8 21868489 21869412 -
Pvu Pvu1g0831 Chr1 13176443 13177425 +
Lasa Lasa6g02772 Chr6 518355657 518356409 +
Tpr Tpr1g1689 Chr1 16146561 16147834 -
Pvu Pvu1g0832 Chr1 13178398 13182705 +
Lasa Lasa6g02775 Chr6 518377584 518379393 +
Tpr Tpr1g1687 Chr1 16108436 16111342 -
Pvu Pvu1g0833 Chr1 13185366 13195476 -
Lasa Lasa6g02776 Chr6 518381354 518386477 -
Tpr Tpr1g1686 Chr1 16100345 16107721 +
Pvu Pvu1g0834 Chr1 13241653 13243692 +
Lasa Lasa6g02778 Chr6 519025582 519026464 -
Spst Spst8g01807 Chr8 21868489 21869412 -
Tpr Tpr1g1684 Chr1 16038416 16039969 -
Pvu Pvu1g0835 Chr1 13271731 13276761 +
Lasa Lasa6g02780 Chr6 519368542 519371546 -
Phac Phac7g01787 Chr7 15153778 15159054 +
Psa Psa6g1292 Chr6 56644575 56648467 -
Tpr Tpr1g1681 Chr1 15999894 16004272 -
Pvu Pvu1g0836 Chr1 13290255 13292956 +
Lasa Lasa6g02781 Chr6 519525557 519528098 +
Psa Psa6g1247 Chr6 52976411 52978706 +
Tpr Tpr1g1680 Chr1 15986709 15989619 -
Pvu Pvu1g0837 Chr1 13293329 13294543 +
Pvu Pvu1g0838 Chr1 13370510 13374384 +
Lasa Lasa6g02784 Chr6 519747560 519752147 +
Tpr Tpr1g1674 Chr1 15910981 15916844 -
Pvu Pvu1g0839 Chr1 13375494 13377473 -
Lasa Lasa6g02785 Chr6 519813085 519813827 -
Psa Psa6g1240 Chr6 52119578 52121119 -
Tpr Tpr1g1673 Chr1 15908765 15910393 +
Pvu Pvu1g0840 Chr1 13377928 13378898 -
Lasa Lasa6g02786 Chr6 519849096 519850066 -
Phac Phac7g01790 Chr7 15194479 15198458 -
Psa Psa6g1238 Chr6 52036757 52038441 +
Tpr Tpr1g1672 Chr1 15905358 15906177 +
Phac Phac7g01787 Chr7 15153778 15159054 +
Psa Psa6g1292 Chr6 56644575 56648467 -