Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0849 ATGACAATCGCCGATGATTCAGTTTTTCCCATGGATAATGTGGCGAGTTGCATACAGCTTCCGCCGGAGGAGGAAAACCGGATCGTATCGGAGTTGGTGAAGGAATCGGAACTTAATTTAAAAGAAGGCAACTTATATTACGTCGTTTCTAACAGGTGGTTTTCAAGGTGGCAGAGTTATGTTGGGCCTTGTGTTGGTATGCTTTCAATTGACAAACAATCTTCTGATGGTCCCCTTACCAACATGACTAACACAAAGATTGCGGATAGACCTGGGCCTATTGATAATTCTGATATTATTTCAAAGGGAAACAACTTTGACAGCAACAGTTTAGATATTTGTCGAATGTTGGGAGAGGGTACAGACTATGTTTTAGTTCCTGAAAAAGTGTGGGAAAGGCTGTTGGAATGGTACAAAGGTGGACCAGCATTACCGAGGAAGTTAATTTCTCAGGGTATTGGACATAAGCAATATAGTGTTGAGGTTTATCCACTTAGTCTAAAGGTTACTGATGCGAGAGACAACAGCCCGTTGATTGTAAAATTAAGCAAAAAGGCTACCATAGGTGAACTTCATGAGCTAGTGTGCAAAATTAAAGGAGTAGAACAAAAGAAGGCCTGTATCTGGGATTACTTCAATTTGAGCAAACATTCACCACTGACAGTCTCAGAGCAGACATTGGAGGAGGCTAACTTGGTTATGGACCATGATATTCTTCTAGAAGTACTACTTGATAGAGATCACTCTTCTCATTCTGGCATGGATTCAATGGGAAATGAACTAGCTTTGGTACCATTAGAACCTCCAAGGTCATCTATGTCAATTGCTGGGGGACCTACCATGTCAAATGGTCACTCAACTGGATCTAGTTTTAGTTTGTGTCAGGGAATTTCTGTAAGTTCGAGTTTGACCAATATGGATGATAAACATGATGTCTATAAAGGTGAAAGGGGTGGTTTGGCAGGACTGCAGAACTTGGGGAACACGTGCTTCATGAATAGTTCTATTCAATGTTTAGTCCACACTCCACCACTTGTTGAATATTTCTTACAGGATTACAGTGATGAAATCAACATGGAAAATCCTTTAGGAATGCATGGTGAGTTAGCACTTGCATTTGGTGACTTGTTGAGGAAACTGTGGTCTTCAGGGCAAACTGCCATTCCGCCCCGTGCATTCAAGAGCAAATTGGCCCGATTTGCTCCACAATTCAGTGGTTATAACCAGCATGATTCTCAGGAATTGCTTGCCTTTTTATTGGATGGTCTGCATGAGGATTTGAATCGTGTGAAACAAAAGCCTTACATTGAAATGAAGGATTCAGATGGTAGGCCAGATGAGGAGGTTGCATCTGAGTGTTGGAAAAATCATATGGCTCGGAATGATTCATTGATTGTTGATGTATGCCAGGGTCAATACAAGTCAACGTTGGTTTGTCCAGAATGTGAAAAAATTTCAATCACTTTTGATCCATTCATGTACTTATCATTGCCACTACCTTCCACTGTCAGTCGCACAATGATAGTAACTGTCTTTTATTGTGATGGGAGTGGTCTTCCAATGCCATACACCGTGACAGTTCTGAAGCATGGTTCCTGTAGAGATCTTTGCCAAGCATTAGGCACTGCATGTTGCTTGAAGAGTGATGAAATGCTTTTGCTTACAGAAGTTTATGACCATAAGATTTATCGATATCTAGAGCCTTTGGAATCATTGAATTCAATAAAGGATGATGATCACATCGTGGCCTATAGAATTAAAAGTGGAGCTAGCGAAACAAAACTTGAAGTTTTGCATCGATGGGTGGATAATATGAAGGGTGGAGAAAGGAAGCCCTTCGGAACCCCCTTGGTTACTTATTTGAAAGAAGATCCTCAATTTGGAGCCAACATTGAGGATTCTGTACATCAATTGTTGGCACCTTTAAGAAGAGCATATTCTTCAACTAAGTCTCATGATGGGAAGGAAAATGGTTTCGTCTCAGCTGGCAGTGATGAGCAACCAAACATCTCCAATACTCACAGCGAATCACAGAGTCTAACAATTGGAAGCAATGAACAAGCAGGAACATCATGCGGGGAGTCATCTTTCCAACTTGTTTTAACTAACGAAAGTTCTGAACCCATTGGGAAGGCTTCTTTTACAAAGCCTAGCAAACTTATAAGAGTCTTTCTGGATTGGAGTGACAGAGAAAATGAATTGTATGATTCTAGCTATCTAAGGGATCTCCCGGAAGTTCACAAACCTGGATTCACTGTGAAGAAAACCAAGCAAGAAGCTATTTCCTTGTTTTCTTGCTTGGAGGCATTCTTGACTGAAGAACCTCTGGGACCAGATGACATGTGGTACTGCCCTAGATGCAAGGAACACAGGCAAGCTACAAAGAAGCTTGACTTATGGAAGTTGCCCGAGATTCTTGTTTTTCACTTAAAACGATTTTCATACAGTAGATATCTAAAAACAAACTTGACACTTTCGTGA 2481 0.4095 MTIADDSVFPMDNVASCIQLPPEEENRIVSELVKESELNLKEGNLYYVVSNRWFSRWQSYVGPCVGMLSIDKQSSDGPLTNMTNTKIADRPGPIDNSDIISKGNNFDSNSLDICRMLGEGTDYVLVPEKVWERLLEWYKGGPALPRKLISQGIGHKQYSVEVYPLSLKVTDARDNSPLIVKLSKKATIGELHELVCKIKGVEQKKACIWDYFNLSKHSPLTVSEQTLEEANLVMDHDILLEVLLDRDHSSHSGMDSMGNELALVPLEPPRSSMSIAGGPTMSNGHSTGSSFSLCQGISVSSSLTNMDDKHDVYKGERGGLAGLQNLGNTCFMNSSIQCLVHTPPLVEYFLQDYSDEINMENPLGMHGELALAFGDLLRKLWSSGQTAIPPRAFKSKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSDGRPDEEVASECWKNHMARNDSLIVDVCQGQYKSTLVCPECEKISITFDPFMYLSLPLPSTVSRTMIVTVFYCDGSGLPMPYTVTVLKHGSCRDLCQALGTACCLKSDEMLLLTEVYDHKIYRYLEPLESLNSIKDDDHIVAYRIKSGASETKLEVLHRWVDNMKGGERKPFGTPLVTYLKEDPQFGANIEDSVHQLLAPLRRAYSSTKSHDGKENGFVSAGSDEQPNISNTHSESQSLTIGSNEQAGTSCGESSFQLVLTNESSEPIGKASFTKPSKLIRVFLDWSDRENELYDSSYLRDLPEVHKPGFTVKKTKQEAISLFSCLEAFLTEEPLGPDDMWYCPRCKEHRQATKKLDLWKLPEILVFHLKRFSYSRYLKTNLTLS* 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0849 826 Gene3D - 9 162 IPR035927 -
Pvu1g0849 826 SUPERFAMILY Cysteine proteinases 319 819 IPR038765 -
Pvu1g0849 826 Pfam DUSP domain 44 149 IPR006615 GO:0004843
Pvu1g0849 826 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 20 822 - -
Pvu1g0849 826 MobiDBLite consensus disorder prediction 662 689 - -
Pvu1g0849 826 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 321 826 IPR028889 -
Pvu1g0849 826 Gene3D - 163 248 - -
Pvu1g0849 826 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 322 337 IPR018200 GO:0004843|GO:0006511
Pvu1g0849 826 ProSiteProfiles DUSP domain profile. 20 149 IPR006615 GO:0004843
Pvu1g0849 826 SMART dusp 39 152 IPR006615 GO:0004843
Pvu1g0849 826 MobiDBLite consensus disorder prediction 647 689 - -
Pvu1g0849 826 Gene3D Cysteine proteinases 554 825 - -
Pvu1g0849 826 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 10-RELATED 20 822 - -
Pvu1g0849 826 Pfam Ubiquitin carboxyl-terminal hydrolase 322 819 IPR001394 GO:0004843|GO:0016579
Pvu1g0849 826 Gene3D Cysteine proteinases 305 533 - -
Pvu1g0849 826 SUPERFAMILY DUSP-like 19 149 IPR035927 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0849 Pvu-Chr1 13700141 13712556 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0849 759 826 Miscellaneous Gene Families AT4G31670 41.176 2.17e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0849 - - pvu:PHAVU_001G082300g 1685.23