Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1662 ATGACAATTGCTGAATCGGATTTTCCGATTGATAATGGAGTTAGTTGTGTTCCGCTTTCACCGGAGGAAGAGAAACGGATCGTATCGGAGTTGGTGAAGAAATCGGAGCTTAATTTGAAAGAAGGCAACTTATACTTCGTTGTTTCCAATAGATGGTTTTCAAGGTGGCAGAGGTATGTCGGGGATTGTGCTGGAATGCTTTCAACCGACCAGCAATCTTCTGATAGACCTGGTCCAATTGATAATTCTGATATTATTACAAACGGAAGTAATTGTGATGGGAATGATTTAGATATTCATCGAACATTGGCAGAGGAGACAGACTATGTTTTAGTTCCTCAAGAAGTATGGGAAAGGTTGTTGGAATGGTACAAAGGTGGACCAGCATTGCCAAGGAAGTTGATTTCTCAGGGTGTTGGACAGAAGCAGTATAGTATTGAGGTGTACCCACTTTGTCTGAAGGTGACTGATGCGAGAGACAACAGTGTTTCAATTGTAAAATTAAGCAAAAAGGCTACCATGAGTGAACTTTATGAGCTGGTGTGCAAAGTTAAAGGAGTAGAACCGAATGAGGCTTCTATTTGGGATTACTTCAATTTGAGCAAACAGTCATTGCTGACGGCTTCAGACCACCAGACATTAGAGGATGCAAACATTACAATGGACCATGATATTCTTCTAGATGTTTCAGTCGACACAGACCGTTCTACTCATTCTGGTGTGCATTCAATGGGAAATGAATTGGCATTGGTACCATTAGAACCTCAAAGATCAACTGTATCAATTGCAGGAGGACCTGCCTTGTCAAATGGTCACACAACTGGGTCTGGTTTTAACTTGTATCAGGGAAGTGGTCACACAACTGGGTCTGGTTTTAACTCTTATCAGGGAAGTTCTGTAAGTTCATCATTGACTACCGTGGACGATAAATATGACGGCTCTAGAGGTGAAAGAGGTGGTTTAGCAGGACTGCAGAACTTGGGGAATACCTGCTTTATGAATAGCTCTATTCAATGTTTAGTCCACACTCCACCACTTGTTGAATTTTTCTTGCAAGATTACAGCGATGAGATCAACATGGACAATCCTTTAGGAATGCGTGGCGAGCTAGCACTTGCATTTGGTGACTTGTTGAGGAAACTCTGGTCCTCTGGGCGAACTGCTGTTGCACCACGTGCATTCAAGGGAAAGCTGGCCCGATTTGCTCCACAATTCAGCGGTTATAACCAGCATGATTCTCAAGAATTGCTTGCCTTTTTATTGGATGGACTGCATGAAGATTTGAATCGTGTGAAACAAAAGCCTTACATTGAAATGAAGGACTCGGATGGTAGGCCAGATGAGGAAGTCGCATATGAGTGTTGGAAAAATCACATGGCTCGGAATGATTCATTGATTGTTGATGAATGCCAGGGTCAATACAAATCAACACTGGTTTGTCCTGAATGTGGCAAAATTTCAATCACTTTCGACCCCTTTATGTACTTATCATTACCCCTTCCTTCCACTGTCACCCGGACAATGACGGTTACTGTATTTTATTGTGATGGGAGTGGTCTTCCAATGCCATACACCGTTACTGTTCTGAAGCATGGTTGCTGCAGAGATCTTGGCCAAGCATTGGGCACTGCATGCTGTTTGAAGAGTGATGAAATGCTTTTTCTTGCAGAGGTTTATGAGAATAAGATTTATCGCTATCTGGATAATCCATTGGAATCATTGACTTCAATAAAGGACGAGGAACATATTGTGGCCTATCGATTCAAGAATGGAGCCAGGAAAACAAAACTAGAAATAACGCACCGATGTCTGGATAATGTGAAGGGCGGGGTTAAGAAGATCTTTGGAACTCCCTTGGTTACTTATTTGGCAGAAGACCCTCAATATGGAGCCAACATTGAGACATATGTACACAGAATGTTGGCACCTTTAAGAAAAGCACATTCTTCAACCAAGTATCATGAAGGGAAGGAAAATGGTTTCATCTCGGCTGATGGTGATGAGCAATCGAGCATCTCTAATTCGCAAAGTGAGCCGAGGAACATGACATTTGGCACTAGTGAACAAGAGGGGACATCCTGTGGGGAGTCGTCTTTCCAACTCGCTTTGACCGACAAAGACGGTTATAACTGGGAGCCCATTGAGAAGGAATCTGTGATTAAACCTGATGCACTTATAAAGGTCTATCTTGACTGGACTGAGAAAGAATATGAATTATATGATGCCAGCTATCTGAGGGATCTTCCCGAAGTCCACAAAACTGGATTCACTGTGAAAAAAACCCGGCCAGAAGCTATTTCTTTGTTTTCATGCTTGGAGGCATTCTTGACTGAAGAACCTCTAGGACCAGATGACATGTGGTACTGCCCTCAATGCAAGGAACACAGACAAGCTACCAAGAAACTAGACTTGTGGAAATTGCCAGAGATTCTGGTTTTTCACTTGAAGCGATTCTCATATAGCAGATACTTGAAAAACAAACTTGATACCTTTGTGAACTTTCCCATTCACAATCTTGATTTGACCAAGTATGTGAAAAATAAGGATGGAACTTCCTATGTGTATAACCTTTATGCAATCAGCAACCATTATGGTGGTCTAGGTGGTGGGCATTACACTGCATATGCTAAGTTGATTGATGATAATAAGTGGTACCATTTCGATGACAGTCATGTCAGTCCTGTTAATGAAGCTGAAATTAAATCTTCAGCTGCATATGTGTTATTTTATCAGAGAGTTGGAAGTGAAGACCAGATGGAAGTAGAGGCGTCTTAG 2775 0.4198 MTIAESDFPIDNGVSCVPLSPEEEKRIVSELVKKSELNLKEGNLYFVVSNRWFSRWQRYVGDCAGMLSTDQQSSDRPGPIDNSDIITNGSNCDGNDLDIHRTLAEETDYVLVPQEVWERLLEWYKGGPALPRKLISQGVGQKQYSIEVYPLCLKVTDARDNSVSIVKLSKKATMSELYELVCKVKGVEPNEASIWDYFNLSKQSLLTASDHQTLEDANITMDHDILLDVSVDTDRSTHSGVHSMGNELALVPLEPQRSTVSIAGGPALSNGHTTGSGFNLYQGSGHTTGSGFNSYQGSSVSSSLTTVDDKYDGSRGERGGLAGLQNLGNTCFMNSSIQCLVHTPPLVEFFLQDYSDEINMDNPLGMRGELALAFGDLLRKLWSSGRTAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSDGRPDEEVAYECWKNHMARNDSLIVDECQGQYKSTLVCPECGKISITFDPFMYLSLPLPSTVTRTMTVTVFYCDGSGLPMPYTVTVLKHGCCRDLGQALGTACCLKSDEMLFLAEVYENKIYRYLDNPLESLTSIKDEEHIVAYRFKNGARKTKLEITHRCLDNVKGGVKKIFGTPLVTYLAEDPQYGANIETYVHRMLAPLRKAHSSTKYHEGKENGFISADGDEQSSISNSQSEPRNMTFGTSEQEGTSCGESSFQLALTDKDGYNWEPIEKESVIKPDALIKVYLDWTEKEYELYDASYLRDLPEVHKTGFTVKKTRPEAISLFSCLEAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWKLPEILVFHLKRFSYSRYLKNKLDTFVNFPIHNLDLTKYVKNKDGTSYVYNLYAISNHYGGLGGGHYTAYAKLIDDNKWYHFDDSHVSPVNEAEIKSSAAYVLFYQRVGSEDQMEVEAS* 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1662 924 MobiDBLite consensus disorder prediction 662 697 - -
Tpr1g1662 924 Gene3D - 10 148 IPR035927 -
Tpr1g1662 924 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 15 918 - -
Tpr1g1662 924 Pfam Ubiquitin carboxyl-terminal hydrolase 323 910 IPR001394 GO:0004843|GO:0016579
Tpr1g1662 924 Gene3D Cysteine proteinases 644 920 - -
Tpr1g1662 924 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 10-RELATED 15 918 - -
Tpr1g1662 924 SMART dusp 38 138 IPR006615 GO:0004843
Tpr1g1662 924 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 323 338 IPR018200 GO:0004843|GO:0006511
Tpr1g1662 924 MobiDBLite consensus disorder prediction 664 697 - -
Tpr1g1662 924 Pfam DUSP domain 43 135 IPR006615 GO:0004843
Tpr1g1662 924 Gene3D Cysteine proteinases 306 516 - -
Tpr1g1662 924 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 855 872 IPR018200 GO:0004843|GO:0006511
Tpr1g1662 924 SUPERFAMILY Cysteine proteinases 320 913 IPR038765 -
Tpr1g1662 924 Gene3D - 149 235 - -
Tpr1g1662 924 ProSiteProfiles DUSP domain profile. 19 135 IPR006615 GO:0004843
Tpr1g1662 924 SUPERFAMILY DUSP-like 16 135 IPR035927 -
Tpr1g1662 924 CDD Peptidase_C19R 759 911 - -
Tpr1g1662 924 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 322 913 IPR028889 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1662 Tpr-Chr1 15774794 15785700 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1662 764 913 Miscellaneous Gene Families AT4G31670 37.908 6.34e-21 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1662 - - cam:101493821 1639.01