Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01287 ATGGCTTCGGGGCCAGTGGTTGGAGGGGATGACGAAGCCAAAGAGAAACAGAGATTTGGGGAGAGGAAGGTTTATACGAGGAGGAAAGTGCTCAAAGGTCAGAAGAAAGACCCAAACGCCCCAAACACAGTTGCTTCCACCACTGAAAATAACGCCTCTACCGTTACCAATGACAGTATCAATAACAGAACTGTCCAGAAGAGCAACGTTGGTGAGTCTGGTGCGGCCAAGAGCAATAGTGAGAACGTTGTGGTCCAGCCTCCTGAACAGTCTGCCATGGAGAAGGGTACTGCTCAGCCACAAGTGAGTTCAAGATTAGAGGATGAGATTTTGGGGCAGAACCCATTGGAGGATCAGATGCAAGTGAGTTTAAGACTGGAGAATGGGAATACAGTTCAAACACCAGTGGAGGATCAGGATATGACACTTACAGAAGGGAGTTCAAGAAAGGAGGATGGAAATATAACTCAGCCTCAATTGGAGGATGGGAATATGGTTCTGTCTAATGGGAATTTGAGGTTGGAGGATGGGAATATGGCCCAGCCTCAAGCGAATTCAAGATTGGAGGATGTGAACATGTCCCAAATTCAAGAGGGTGGGAATATGGCTCAGCCTCAAGTGAGTTCAAAGTCAGAGGATGGGAGTGCAGCTCTGCCACACATGGGTTCAAGGTCAGAAGATGGAAACACGGCCCAGCCACAAGTGTCACTGGATGGGAATATGGCTCAACCACAATTTAGTTCAAGATTAGAGGATGGGAATATAGCTCAGCTACAAGTGAGTCCTAGGTCAGAGGATGTCAACATGGTTCAGCCGCAAGAGAGTTCAAAATTGGAGGGTAAAAAGTCCCCTCAGCCAGAAGTGAATTCAAGAATGGAGGGTGGGAATTCACCCCAGCTGCAAGTGAACTCAAGATTGGTGGGTGGGGTTTTGCCCCTGTCACATGTAAATTCAAGATGGGATGGGGATACAGTTCAACCACCAGTAGTGCTGGTCTCTGATGACTCGTATAATCGACAGCGTGATGAACCTTCTAGCCTCAATGTTGAGCAGGAGGATGATGGACCTTTAAGCCCCAGCCCTCATCAGGAGGCAGTTCCTAGCACCCGAGGCCTTCCATTGGGGAATGGGGTTGTGGAGCCTCGACAGAGGGATCGAATCAAGATAAGCTTGTCCTCAAAATCAAAACAACAAATACGGGAGATTCGGTGGAAGCTTGAAAGTGAGCTTGATGTTGTAAGAAGTTTGGTTAATAGGATTGAAGTGAAGCAGAGGCAAGTTGGTGGATATCGCAACTCAAATGTCCTGGTTGCTAGTGGGATGGATAATGTGGGTGGAGCAAAGCGTGCTCACTCAGAAGTGGCATCTGCTGGTGTTCCAAGGGAACCTGCCAGTTCTAGGCCTTTGCACCAGTTAAGTTTGTCAATGTTGGAGAATAGTCAGGGGATTGGTGAAACTGTTGAGAAGGAGAAGAGGACACCTAAAGCAAACCAATTTTATCGTAACTCAGAGTTCTTGCTTGCAAAAGATAAATTTCCCCCAGCAGAGAGTAACAAGAAGTCAAAGTTGAATTGGAAGAAACAAGGTGGTGGAGAAATGCGACATGGTTTTGGGATGGGATCTAAGTTTTTCAAAAGCTGTAGTTCATTGCTTGAAAAATTGATGAAACACAAGCATGGTTGGGTTTTTAATGCTCCTGTTGATGTTGAGGGTCTTGGTTTGCATGATTATTTTACTATCATCACTCATCCAATGGACTTGGGAACTGTGAAGTCAAGGCTGAACAAGAATTGGTACAAATCACCAAAGGAATTTGCAGAGGATGTCAGACTCACTTTTAATAATGCCATGACATATAATCCAAAGGGACAAGATGTTCATATAATGGCAGAGCAGTTAGCAAAGATATTTGAAGACAGATGGGCTATAATCGAGTCAGATTATAATCGGGAGATGAGATGTGGGTTTGATTACGGTGCAGCTCCCCCTGCACCTTCACCTTTATCAAGAAGGGTTTCTGCTTTTACACCACCACCACATCTTGATATGAGAAGGATTTTGGATAGATCAGAATCAATGACACAGACTCCAAAACCTATGAGCTTTACTCCATCAAGTAGAACCCCAGCCCCAAAAAAACCAAAAGCAAAAGATCCTTACAAAAGAGACATGACGTTTGAGGAAAAACAAAAACTAAGCACTAACCTTCAGAGTTTACCTTCAGAGAAGCTTGATGCTATTGTACAAATCATTAAGAAGAGAAATTTAGCACTTGATCAACATGATGATGAAATTGAAGTAGACATTGATAATGTGGATGCTGAAACACTCTGGGAGCTTGATAGATTTGTGACCAACTATAAGAAAAGTTTGAGCAAAAATAAAAGGAAGGCTGAACTTGCACGAGCTCGAGCAGAAGCCTTGCAGCAGAATGCCATCCAGAAGAGCCAGGCACCAGCTATAGAAGAGATTCCGAAGGAAATACAAACAGATGAAAGGAATGTTCCCCAATCATTGCCTGTGCAAGGGGGAAATCAAGCTGACAACGGGAGTAGGTCAAGCAGTTCAAGTAGTTCCAGCAGTGATTCTGGATCTTCTTCAAGTGGTACATTGATCATGATTTATCGTCTATCTTACATGTTATTTATTCTGACAGCGACAGTTCCTCAGCGTCTGGATCTGATGCAGGGTCACAAGGAACCTAAATATGCTGTCTGGTAG 2721 0.4447 MASGPVVGGDDEAKEKQRFGERKVYTRRKVLKGQKKDPNAPNTVASTTENNASTVTNDSINNRTVQKSNVGESGAAKSNSENVVVQPPEQSAMEKGTAQPQVSSRLEDEILGQNPLEDQMQVSLRLENGNTVQTPVEDQDMTLTEGSSRKEDGNITQPQLEDGNMVLSNGNLRLEDGNMAQPQANSRLEDVNMSQIQEGGNMAQPQVSSKSEDGSAALPHMGSRSEDGNTAQPQVSLDGNMAQPQFSSRLEDGNIAQLQVSPRSEDVNMVQPQESSKLEGKKSPQPEVNSRMEGGNSPQLQVNSRLVGGVLPLSHVNSRWDGDTVQPPVVLVSDDSYNRQRDEPSSLNVEQEDDGPLSPSPHQEAVPSTRGLPLGNGVVEPRQRDRIKISLSSKSKQQIREIRWKLESELDVVRSLVNRIEVKQRQVGGYRNSNVLVASGMDNVGGAKRAHSEVASAGVPREPASSRPLHQLSLSMLENSQGIGETVEKEKRTPKANQFYRNSEFLLAKDKFPPAESNKKSKLNWKKQGGGEMRHGFGMGSKFFKSCSSLLEKLMKHKHGWVFNAPVDVEGLGLHDYFTIITHPMDLGTVKSRLNKNWYKSPKEFAEDVRLTFNNAMTYNPKGQDVHIMAEQLAKIFEDRWAIIESDYNREMRCGFDYGAAPPAPSPLSRRVSAFTPPPHLDMRRILDRSESMTQTPKPMSFTPSSRTPAPKKPKAKDPYKRDMTFEEKQKLSTNLQSLPSEKLDAIVQIIKKRNLALDQHDDEIEVDIDNVDAETLWELDRFVTNYKKSLSKNKRKAELARARAEALQQNAIQKSQAPAIEEIPKEIQTDERNVPQSLPVQGGNQADNGSRSSSSSSSSSDSGSSSSGTLIMIYRLSYMLFILTATVPQRLDLMQGHKEPKYAVW 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01287 906 PRINTS Bromodomain signature 558 571 IPR001487 GO:0005515
Vimu5g01287 906 PRINTS Bromodomain signature 590 608 IPR001487 GO:0005515
Vimu5g01287 906 PRINTS Bromodomain signature 608 627 IPR001487 GO:0005515
Vimu5g01287 906 PRINTS Bromodomain signature 574 590 IPR001487 GO:0005515
Vimu5g01287 906 CDD Bromo_plant1 544 641 IPR037377 -
Vimu5g01287 906 ProSiteProfiles Bromodomain profile. 555 627 IPR001487 GO:0005515
Vimu5g01287 906 ProSiteProfiles NET domain profile. 714 795 IPR027353 -
Vimu5g01287 906 MobiDBLite consensus disorder prediction 225 239 - -
Vimu5g01287 906 MobiDBLite consensus disorder prediction 259 279 - -
Vimu5g01287 906 SUPERFAMILY Bromodomain 538 649 IPR036427 GO:0005515
Vimu5g01287 906 MobiDBLite consensus disorder prediction 668 722 - -
Vimu5g01287 906 MobiDBLite consensus disorder prediction 199 239 - -
Vimu5g01287 906 Coils Coil 788 811 - -
Vimu5g01287 906 Gene3D - 717 798 IPR038336 -
Vimu5g01287 906 MobiDBLite consensus disorder prediction 827 867 - -
Vimu5g01287 906 MobiDBLite consensus disorder prediction 39 108 - -
Vimu5g01287 906 PANTHER OSJNBA0053K19.4 PROTEIN 382 868 - -
Vimu5g01287 906 Pfam Bromodomain extra-terminal - transcription regulation 724 785 IPR027353 -
Vimu5g01287 906 MobiDBLite consensus disorder prediction 9 35 - -
Vimu5g01287 906 MobiDBLite consensus disorder prediction 335 378 - -
Vimu5g01287 906 MobiDBLite consensus disorder prediction 259 301 - -
Vimu5g01287 906 SMART bromo_6 540 646 IPR001487 GO:0005515
Vimu5g01287 906 MobiDBLite consensus disorder prediction 1 115 - -
Vimu5g01287 906 Gene3D - 518 654 IPR036427 GO:0005515
Vimu5g01287 906 MobiDBLite consensus disorder prediction 128 164 - -
Vimu5g01287 906 MobiDBLite consensus disorder prediction 831 867 - -
Vimu5g01287 906 MobiDBLite consensus disorder prediction 199 213 - -
Vimu5g01287 906 Pfam Bromodomain 547 631 IPR001487 GO:0005515
Vimu5g01287 906 MobiDBLite consensus disorder prediction 692 708 - -
Vimu5g01287 906 MobiDBLite consensus disorder prediction 287 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01287 Vimu-Chr5 22845181 22848146 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01287 - K11684 gmx:100817007 1127.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01287 5 22845181 22848146 Vimu5g01287 5 22845181 22848146 ECH
Vimu4g01141 4 10000972 10003104 Vimu5g01287 5 22845181 22848146 PCT