Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01196 ATGGCTTCGGGGCCTGTGGTTGGAGGAGATGACGCGGCTAAAGAGAAACAGAGATTTTCGGAGAGGAAGGTTTACACGAGGAGAGTGTTCAGAGGCCGTAAGAAAGACCCTAATGCTGCGGACGATTCTGCTTCCGCCCCTGAAAGTAGTAAAATTGACAACGCTGCCGCCACTTCCACCGTCACGAATGAGAACAGTAACAACAACAGCGCGGTGCAGAACAGCACCGCCGGGGAGGCCAAAAGCAATAGTGATAACGTTTCCACTCAGCCTCAGGCTCTGCAACAGGCTGTGCCAGAGGATGGGAATTTGGCTCAGCCACTAGTGGGTTCTAAATTAGAGGATGGGAATTCGGCTCAGCCTCAAGTGGGTTCTAGATTAGAGGATGGGAATTTGGCTCAGCTGCAATTGGAGAATCAGAATATGGTTCAGGTGCAAGTGGATTCAGAATTGGAGGATGGGAATACGACTCTGCCTCAAGTGGAGGATCAGAATATGGCACAGAAGCAAGTAAGTCCAGTATTGGAGGATGGGAATACTTCTCAGCCACAGTTGGATGATCAAAATATGGCACAGACGCAAGGGAGTTTAAGATTGGAGGATGGGAATACAGTTCAGCCCCAGGTGAGTTCAGGGGCAGAGGATGGGGATACGACACAACCAAATGTGAGTTTAAGGACTGGAGATGAGAATATGGCTCAGCCACAAGTGAGTTCTAGAACTGGGGATGAGAACATGGCTCAGCCACAAGTGAGTTTAAGAACTGGGGACGAGAATGTGGCTCAACCACAAGTGAGTTCAAGATCAGAAGATGGGAATATGTCTCAGCTGCAAGTGAGTTCAAAATCAGATGATGGGAATATGTCTCAGATGCAAGTGAGTTCAAGATCAGAGGACGGGAATATGGCTCAGCTGCAAGTTAGTTCAAGATCAGAGGATGGGAATATGGCTCAGCTGCAAGTTAGTTCAAGATCAGAGGATGTGAATATGGCTCAGCCACAAGTCAGTTCACAATTGGTAAATAGAAAATCCCCTCAGCCAGAAGTGAATTCAAGATTGGAGGATGGGAATTCACCTCAGCAGCAAGTGAATTCAAGATTGGAGGATGGGGTTTTACCTCAGTCACAGATGAATTCAATGTTGGATGGGGATACGGTTCAGCCTCATGTAGTGTTGGTTTCTGATGATTCATGCATCCGGCAGCAGGATGAACCTTCTAGCCTCCATGTTCAGCAGGAGGATGATGGACCTTCAAGCCCCAGCCCTCATATGGAGGCAGTTCCTAGCACCCGACATCTAACATTGGTGAATGGGGATGTTGAGCGACGACAGAGGGATCGAATCAAGATAAACTTGGCCTCAAAATCAAAGCAGGAGATGCGGGAGCTTCGGTGGAAGCTTGAAAATGAGCTTGATGTTGTGAGAAGTTTGGTTAATAGGATTGAAGTGAAGCAAAGGCAAGTTGGTGGATATGGCAACTCAAATGTGCTAGTGGGTGGTGGGATTGATAATGTGGGTGGAGCAAAGCGTGCTCACTCAGAGGTGGCTTCTGCTGGTGTTCCACGACAACTTGCCAGGCCTTTGCACCAGTTAAGTTTGTCAATGTTGGAGAATAGTCAAGGAATCGGTGAAACTGTTGAGAAGGAGAAGAGAACACCTAAAGCAAACCAATTTTATCGTAACTCAGAGTTCTTGCTTGCAAAAGATAAATTTCCACCAGTGGAGAGTAACAAGAAGTCAAAATTGAATTGGAAGAAGCAAGGTGGGGGAGAAATGGGACTTGGTTTTGGGATGGGATCTAAGCTTTTCAAAAGCTGTAGTTCACTGCTTGAAAAGTTGATGAAACACAAGCATGGTTGGGTGTTTAATGCTCCTGTTGATGTTGAGGGTCTTGGTTTGCATGATTATTTTACTATCATTACTCATCCAATGGACTTGGGAACTGTGAAGTCAAGGCTGAATAAGAATTGGTACAAATCACCAAAGGAATTTGCTGAGGATGTGAGACTCACTTTTCGTAATGCCATGACATATAATCCAAAGGGACAAGATGTTCATGTAATGGCAGAGCAGTTATCAGAGATGTTTGAGAACAGATGGGTTATAATTGAGTCAGAGTACAATCGGGAGACAAGATATGGCTTTGATTATGGGGCAGCTCCCCATGCACCTTCGCCATTGTCAAGAAGGGTTTCTGCTTTTACACCACCACCTCTTGATATGAGAAGGATTTTGGATAGATCAGAATCATTGATAAGGACTCAAAAACCCATGAGCATTACTCCATCAAGTAGAACCCCAGCTCCAAAAAAGCCAAAGGCAAAAGATCCTCATAAAAGAGACATGACGTTTGATGAAAAGCAAAAACTAAGCACTAATCTTCAGAGTTTACCTTCAGAAAAGCTTGATGCTATTGTACAAATCATCAAGAAGAGAAATTCAGCACTTAATCAACATGATGATGAAATTGAAGTGGACATTGATAGTGTGGATGCTGAGACTCTCTGGGAGCTTGATAGATTTGTGACCAACTATAAGAAAAGTTTGAGCAAAAATAAGAGGAAGGCTGAACTTGCTCGAGCTAGAGCGGAAGCTTTGCAGCAGAATGCCATTCAGAAGAGCCAGGCACCAGCTATGGTGGAGATTCCAAAAGAAACACAAACAGAAGAAAGAAATGTTCCCCAATCGTTTCCTGTGCAAGGGGGTAATCAAACAGATAATGGGAGTAGGTCAAGCAGTTCAAGCAGCTCCAGCAGTGATTCTGGATCTTCTTCGAGTGATTCTGATAGTGACAGTTCCTCAGCATCTGGGTCTGATGCAGGGTCGCAAGGGACCTGA 2838 0.4517 MASGPVVGGDDAAKEKQRFSERKVYTRRVFRGRKKDPNAADDSASAPESSKIDNAAATSTVTNENSNNNSAVQNSTAGEAKSNSDNVSTQPQALQQAVPEDGNLAQPLVGSKLEDGNSAQPQVGSRLEDGNLAQLQLENQNMVQVQVDSELEDGNTTLPQVEDQNMAQKQVSPVLEDGNTSQPQLDDQNMAQTQGSLRLEDGNTVQPQVSSGAEDGDTTQPNVSLRTGDENMAQPQVSSRTGDENMAQPQVSLRTGDENVAQPQVSSRSEDGNMSQLQVSSKSDDGNMSQMQVSSRSEDGNMAQLQVSSRSEDGNMAQLQVSSRSEDVNMAQPQVSSQLVNRKSPQPEVNSRLEDGNSPQQQVNSRLEDGVLPQSQMNSMLDGDTVQPHVVLVSDDSCIRQQDEPSSLHVQQEDDGPSSPSPHMEAVPSTRHLTLVNGDVERRQRDRIKINLASKSKQEMRELRWKLENELDVVRSLVNRIEVKQRQVGGYGNSNVLVGGGIDNVGGAKRAHSEVASAGVPRQLARPLHQLSLSMLENSQGIGETVEKEKRTPKANQFYRNSEFLLAKDKFPPVESNKKSKLNWKKQGGGEMGLGFGMGSKLFKSCSSLLEKLMKHKHGWVFNAPVDVEGLGLHDYFTIITHPMDLGTVKSRLNKNWYKSPKEFAEDVRLTFRNAMTYNPKGQDVHVMAEQLSEMFENRWVIIESEYNRETRYGFDYGAAPHAPSPLSRRVSAFTPPPLDMRRILDRSESLIRTQKPMSITPSSRTPAPKKPKAKDPHKRDMTFDEKQKLSTNLQSLPSEKLDAIVQIIKKRNSALNQHDDEIEVDIDSVDAETLWELDRFVTNYKKSLSKNKRKAELARARAEALQQNAIQKSQAPAMVEIPKETQTEERNVPQSFPVQGGNQTDNGSRSSSSSSSSSDSGSSSSDSDSDSSSASGSDAGSQGT 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01196 945 PANTHER TRANSCRIPTION FACTOR GTE4 1 940 - -
Cca04g01196 945 MobiDBLite consensus disorder prediction 769 783 - -
Cca04g01196 945 ProSiteProfiles Bromodomain profile. 614 686 IPR001487 GO:0005515
Cca04g01196 945 PANTHER OSJNBA0053K19.4 PROTEIN 1 940 - -
Cca04g01196 945 Gene3D - 775 856 IPR038336 -
Cca04g01196 945 MobiDBLite consensus disorder prediction 43 99 - -
Cca04g01196 945 MobiDBLite consensus disorder prediction 197 364 - -
Cca04g01196 945 Pfam Bromodomain extra-terminal - transcription regulation 782 843 IPR027353 -
Cca04g01196 945 MobiDBLite consensus disorder prediction 751 783 - -
Cca04g01196 945 MobiDBLite consensus disorder prediction 868 945 - -
Cca04g01196 945 Gene3D - 583 713 IPR036427 GO:0005515
Cca04g01196 945 Coils Coil 846 869 - -
Cca04g01196 945 MobiDBLite consensus disorder prediction 402 428 - -
Cca04g01196 945 MobiDBLite consensus disorder prediction 113 132 - -
Cca04g01196 945 MobiDBLite consensus disorder prediction 402 418 - -
Cca04g01196 945 MobiDBLite consensus disorder prediction 889 945 - -
Cca04g01196 945 MobiDBLite consensus disorder prediction 11 41 - -
Cca04g01196 945 ProSiteProfiles NET domain profile. 772 853 IPR027353 -
Cca04g01196 945 MobiDBLite consensus disorder prediction 752 766 - -
Cca04g01196 945 Pfam Bromodomain 606 690 IPR001487 GO:0005515
Cca04g01196 945 PRINTS Bromodomain signature 617 630 IPR001487 GO:0005515
Cca04g01196 945 PRINTS Bromodomain signature 633 649 IPR001487 GO:0005515
Cca04g01196 945 PRINTS Bromodomain signature 649 667 IPR001487 GO:0005515
Cca04g01196 945 PRINTS Bromodomain signature 667 686 IPR001487 GO:0005515
Cca04g01196 945 MobiDBLite consensus disorder prediction 1 132 - -
Cca04g01196 945 SMART bromo_6 599 705 IPR001487 GO:0005515
Cca04g01196 945 CDD Bromo_plant1 602 700 IPR037377 -
Cca04g01196 945 SUPERFAMILY Bromodomain 597 707 IPR036427 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01196 Cca-Chr4 13856790 13863742 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01196 - K11684 gmx:100780669 1171.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00927 10 10746208 10751307 Cca04g01196 04 13856790 13863742 PCT