Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1406 ATGGCTTCGGGGCCTGTGGTTGGAGGGGATGATGAAGCCAAAGAGAAACAGAGATTTGGGGAGAGGAAAGTTTACACGAGGAGGAAAGTGCTCAAAGGCCAAAAGAAAGACCCTAACGCTCCGAACTCCGTTGCTTCCGCCACTGAAAATAACGCCACAGCCGCTACAGCCACGTCTACCGTTACCAATGAGAATAGTATCAATAGCAGAATCACAACCGTCCAGAAGAACAAAGTTGGTGAGTCCGGGGAGGCCAAGAGCAATAGTGATAAAGTTGTGGCCCAGCCTCCTGAACAGTCTGCCGTGCCGGAAGATACTGCTCAGCCTCAAGTGAGTTCTAGATTAGAGGATCAGATGCAAGCGAGTTTAAGACTGGATAATGGGAATACAGTTCAGCCACCACCCGAGGATCAGGATATGACATTGACCGAAGGGAGTTCAAGAAAGGAGGATGAAAATATAACTCAGTCGCAATTGGAGGATGGGAATATGGTTCTGCCCAATGGGAATTCAAGGTTAGAGGATGGGAATATGGCCCAACTTCAAGTGAGTTCAAGATTGGAGGATGTGAATATGACAGAGCCTCAAGCGAGTACAAGGTCAGGAGATGGAAATATGACTGAGCCTCAAGTGAGTTCAAAATCAGAGGATGGGAGTGCAGTTCTGCCACATGGGAGTTCAAGGTCAGAAGATGGGAACACCACTCAGCCACAAGTGTCATTGGATGATGGGAACATGGCTCAACCACAATTGAGTTCAAGGTCAGAGGATGGGAATATAGCTCAACTACAAGTGAGTCCTAGATCAGAGGATATGAATATGGTTCAAGCGCAAGAGAGTTCAAAATTGGAGGGTAGAAAGTCCCCTCAGCCAGAAGTGAATTCAAGAATGGAGGATGGGAATTCACCCCAGCTGCAAGTGAACTCAAGATTGGAGGATGGGGTTTTGCCTAGGTCACATGTGAATTCAAGATGGGATGAGGATACAGTTCAACCACCAGTAGTGCTGGTTTCTGATGACTCATACAACCGACAGCGTGATGAACCTTCTAGCCTCAATGTCGAGCAGGAGGATGATGGACCTTCAAGCCCCAGTCGTCATCAGGAGGCAGTTCCTAGCACCCGCGGCCTTACATTGGGGAATGGTGTTGTGGAGCCACGACAGAGGGATCAAATCAAGATAAGTTTGTCCTCAAAGTCAAAACAGCAAATACGAGAGATTCGGTGGAAGCTTGAAAGTGAGCTTGATGTTGTAAGAAGTTTAGTTAATAGGATTGAAGTGAAGCAGAGGCAAGTTGGTGGATATCGCAACTCAAATGTGCTGGTTGGTAGTGGGATGGATAATGTGGGTGGAGCAAAGCGTGCTCACTCAGAGGTGGCATCTGTTGGTGTTCCAAGGGAACCTGCCAGTTCCAGGCCCTTGCACCAGTTAAGTTTGTCAATGTTGGAAAATAGTCAGGGGATTATTGAAACTGTTGAGAAGGAGAAGAGAACACCTAAAGCAAACCAATTTTATCATAACTCAGAGTTCTTGCTTGCAAAAGATAAATTTCCTCCAGCAGAGAGTAACAAGAAGTCAAAGTTGAATTGGAAGAAGCAAGGCGGGGGAGAAATGAGACATGGTTTTGGGATGGGATCTAAGTTTTTCAAAAGCTGTAGTTCACTGCTTGAAAAATTGATGAAACACAAGCATGGTTGGGTGTTTAATGCTCCTGTTGATGTTGAGGGTCTTGGTTTGCATGATTATTTCACTATCATCACTCATCCAATGGACTTGGGAACTGTAAAATCAAGGCTGAACAAGAATTGGTACAAATCACCAAAGGAATTTGCAGAGGATGTGAGACTCACTTTTCATAATGCCATGACGTATAATCCAAAGGGACAAGATGTTCATATAATGGCAGAGCAGTTAGCAAAGATATTTGAAGACAGATGGGCTATAATCGAGTCAGATTATAATCGGGAGATGAGATGTGGGTTTGATTATGGGGCAGCTCCCCCTGCACCTTCACCTTTGTCAAGAAGGGTTTCTGCTTTTACACCACCACCACATCTTGATATGAGAAGGATTTTGGATAGATCAGAATCAATGACACAGACTCCAAAACCTATGAGCTTTACACCATCAAGTAGAACCCCAGCTCCAAAAAAGCCAAAGGCAAAAGATCCTTACAAAAGAGACATGACGTTTGAGGAAAAACAAAAACTTAGCACTAACCTTCAGAGTTTACCTTCAGAGAAGCTTGATGCTATAGTACAAATCATTAAGAAGAGAAATTTAGCACTTGATCAACATGATGATGAAATTGAAGTAGACATTGATAATGTGGATGCTGAAACTCTCTGGGAGCTTGATAGATTTGTGACCAACTATAAGAAAAGTTTGAGCAAAAATAAAAGGAAGGCTGAACTTGCACGAGCTAGAGCAGAAGCCTTGCACCAGAGTGCTATCCAGAAGAGCCAGGCACCAGCTATGGAAGAGATTCCAAACGAAACACAAACAGATGAAAGGATTATTCCCCAATCATTGCCTGTGCAAGGGGGAAATCAAGCGGATAACGGGAGTAGGTCAAGCAGTTCAAGCAGCTCCAGCAGTGATTCAGGATCTTCTTCAAGTGATTCTGATAGTGACAGTTCCTCAGCGTCTGGATCTGATGCAGGGTCACAAGGGACCTGA 2679 0.4468 MASGPVVGGDDEAKEKQRFGERKVYTRRKVLKGQKKDPNAPNSVASATENNATAATATSTVTNENSINSRITTVQKNKVGESGEAKSNSDKVVAQPPEQSAVPEDTAQPQVSSRLEDQMQASLRLDNGNTVQPPPEDQDMTLTEGSSRKEDENITQSQLEDGNMVLPNGNSRLEDGNMAQLQVSSRLEDVNMTEPQASTRSGDGNMTEPQVSSKSEDGSAVLPHGSSRSEDGNTTQPQVSLDDGNMAQPQLSSRSEDGNIAQLQVSPRSEDMNMVQAQESSKLEGRKSPQPEVNSRMEDGNSPQLQVNSRLEDGVLPRSHVNSRWDEDTVQPPVVLVSDDSYNRQRDEPSSLNVEQEDDGPSSPSRHQEAVPSTRGLTLGNGVVEPRQRDQIKISLSSKSKQQIREIRWKLESELDVVRSLVNRIEVKQRQVGGYRNSNVLVGSGMDNVGGAKRAHSEVASVGVPREPASSRPLHQLSLSMLENSQGIIETVEKEKRTPKANQFYHNSEFLLAKDKFPPAESNKKSKLNWKKQGGGEMRHGFGMGSKFFKSCSSLLEKLMKHKHGWVFNAPVDVEGLGLHDYFTIITHPMDLGTVKSRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKGQDVHIMAEQLAKIFEDRWAIIESDYNREMRCGFDYGAAPPAPSPLSRRVSAFTPPPHLDMRRILDRSESMTQTPKPMSFTPSSRTPAPKKPKAKDPYKRDMTFEEKQKLSTNLQSLPSEKLDAIVQIIKKRNLALDQHDDEIEVDIDNVDAETLWELDRFVTNYKKSLSKNKRKAELARARAEALHQSAIQKSQAPAMEEIPNETQTDERIIPQSLPVQGGNQADNGSRSSSSSSSSSDSGSSSSDSDSDSSSASGSDAGSQGT* 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1406 892 Coils Coil 793 813 - -
Pvu11g1406 892 MobiDBLite consensus disorder prediction 673 727 - -
Pvu11g1406 892 MobiDBLite consensus disorder prediction 815 892 - -
Pvu11g1406 892 PANTHER OSJNBA0053K19.4 PROTEIN 1 887 - -
Pvu11g1406 892 SMART bromo_6 545 651 IPR001487 GO:0005515
Pvu11g1406 892 PANTHER TRANSCRIPTION FACTOR GTE4 1 887 - -
Pvu11g1406 892 MobiDBLite consensus disorder prediction 39 141 - -
Pvu11g1406 892 PRINTS Bromodomain signature 563 576 IPR001487 GO:0005515
Pvu11g1406 892 PRINTS Bromodomain signature 579 595 IPR001487 GO:0005515
Pvu11g1406 892 PRINTS Bromodomain signature 595 613 IPR001487 GO:0005515
Pvu11g1406 892 PRINTS Bromodomain signature 613 632 IPR001487 GO:0005515
Pvu11g1406 892 Pfam Bromodomain 552 636 IPR001487 GO:0005515
Pvu11g1406 892 MobiDBLite consensus disorder prediction 173 284 - -
Pvu11g1406 892 ProSiteProfiles NET domain profile. 719 800 IPR027353 -
Pvu11g1406 892 CDD Bromo_plant1 549 646 IPR037377 -
Pvu11g1406 892 Gene3D - 522 659 IPR036427 GO:0005515
Pvu11g1406 892 MobiDBLite consensus disorder prediction 697 713 - -
Pvu11g1406 892 MobiDBLite consensus disorder prediction 1 384 - -
Pvu11g1406 892 Gene3D - 722 803 IPR038336 -
Pvu11g1406 892 MobiDBLite consensus disorder prediction 9 35 - -
Pvu11g1406 892 ProSiteProfiles Bromodomain profile. 560 632 IPR001487 GO:0005515
Pvu11g1406 892 MobiDBLite consensus disorder prediction 142 156 - -
Pvu11g1406 892 Pfam Bromodomain extra-terminal - transcription regulation 729 790 IPR027353 -
Pvu11g1406 892 MobiDBLite consensus disorder prediction 294 309 - -
Pvu11g1406 892 SUPERFAMILY Bromodomain 543 654 IPR036427 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1406 Pvu-Chr11 30945933 30950992 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1406 - K11684 gmx:100817007 1108.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1406 11 30945933 30950992 Pvu11g1406 11 30945933 30950992 ECH
Pvu5g1001 5 28707618 28710788 Pvu11g1406 11 30945933 30950992 PCT