Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01539 ATGGCTTCGGGGCCTGTGGTTGGAGGGGATGATGAAGCCAAAGAGAAACAGAGATTCGGGGAGAGGAAAGTTTACACGAGGAGGAAAGTGCTCAAAGGCCAAAAGAAAGACCCTAACGCTCTGAACGCCGTTGCTTCCACCACTGAAAATAACGCCACAGCCGCTACAGCCACTTCTACCGTTACCAATGAGAATAGTATCAATAACAGAACCACAACCGTCCAGAAGAGCAAAATTGGTGAGTCCGGTGAGGCCAAGAGCAATAGTGATAAAGTTGTGGCCCAGCCTCCTGAACAGTCTGCGGTGCCAGAAGATACTGCTCAGCCTCAAATGAGTTCTAGATTAGAGGATCAGATGCAAGCGAGTTTAAGACTGGATAATGGGAATACAGTTCAGCCACCACTCGAGGATCAGGATATGACACTGACAGAAGGTAGTTCAAGAAAGGAGGATGAAAATATAACTCAGTCGCAATTGGAGGAAGGGAATATGGTTCTGTCCAATGGGAATTCAAGGTTGGAGGATGGGAATATGGCCCAACTTCAAGTGAGTTCAAGATTGGAGGATGTGAATATGACCGAGCCTCAAGCGAGTACAAGATCAGGGGATGGGAATATGGCTCAGCCTCAAGTGAGTTCGAAATCAGAGGATGGGAGTGCAGTTCTGCCACATGGGGGTTCAAGGTCACAAGATGGGAACACCACTCAGCCTCAAGTGTCATTGGATGGGAATATGGCTCAACCACAATTGAGTTCAAGGTCAGAGGATGGGAATATAGCTCAACTACAAGTGAGTCCTAGATCACAGGATATCCATATGGTTCAAGCGCAAGAGAGTTCAAAATTGGAGGGTAGAAAGTCCCCTCAGCCAGAAGTGAATTCAAGAATGGAGGATGGGAATTCACCCCAGCTGCAAGTGGACTCAAGATTGGAGGATGGGGTTTTGCCTAGGTCACATGTGGATTCAAGATGGGATGAGGATACAGTTCAACCACCAGTAGTGCTGGTTTCTGATGACTCGTACAACCGGCAGCGTGATGAACCTTCTAGCCTCAATGTCGAGCAGGAGGATGATGGACCTTCAAGCCCCAGCCGTCATCAGGAGGCAGTTCCTAGCACCCGAGGCCTTACATTGGGGAATGGGGTTGTGGAGCCACAACAGAGGGATCAAATCAAGATAAGTTTGTCCTCAAAATCAAAACAGCAAATACGAGAGATTCGGTGGAAGCTTGAAAGTGAGCTTGATGTTGTAAGAAGTTTAGTTAATAGGATTGAAGGGAAGCAGAGGCAAGTTGGTGGATATCGCAACTCAAATGTGCTGGTGGGTAGTGGGATGGATAATGTGGGTGGTGCAAAGCGCGCTCACTCAGAGGTGGCATCTGTTGGTGTTCCAAGGGAACCTGCCAGTTCTAGGCCCTTGCACCAGTTAAGTTTGTCAATGTTGGAGAATAGTCAGGGGATTAGTGAAACTGTTGAGAAGGAGAAGAGAACACCTAAAGCAAACCAATTTTATCATAACTCAGAGTTCTTGCTTGCAAAAGATAAATTTCCTCCAGCAGAGAGTAACAAGAAGTCAAAGTTGAATTGGAAGAAGCAAGGTGGGGGAGAAATGAGACATGGTTTTGGGATGGGATCTAAGTTTTTCAAAAGCTGTAGTTCACTGCTTGAAAAATTGATGAAACACAAGCATGGTTGGGTGTTTAATGCTCCTGTTGATGTTGAGGGTCTTGGTTTGCATGATTATTTCACTATCATCACTCATCCAATGGACTTGGGAACTGTAAAATCAAGGCTGAACAAGAATTGGTACAAATCACCAAAGGAATTTGCAGAGGATGTGAGACTCACTTTTCATAATGCCATGACATATAATCCAAAGGGACAAGATGTTCATATAATGGCAGAGCAGTTAGCAAAGATATTTGAAGACAGATGGGCTATAATCGAGTCAGATTATAATCGGGAGATGAGATGTGGGTTTGATTATGGGGCAGCTCCCCCTGCACCTTCACCTTTGTCAAGAAGGGTTTCTGCTTTTACACCACCACCACATCTTGATATGAGAAGGATTTTGGATAGATCAGAATCAATGACACAGACTCCAAAACCTATGAGCTTTACTCCATCAAGTAGAACCCCAGCTCCAAAAAAGCCGAAGGCAAAAGATCCTTACAAAAGAGACATGACATTTGAGGAAAAACAAAAACTAAGCACTAACCTTCAGAGTTTACCTTCAGAGAAGCTTGATGCTATAGTACAAATCATTAAGAAGAGAAATTTAGCACTTGATCAACATGATGATGAAATTGAAGTAGACATTGATAATGTGGATGCTGAAACTCTCTGGGAGCTTGATAGATTTAAGCCTTACACCAGAGTGCTATCCAGAAGAGCCAGGCACCAGCTATGGAAGAGATTCCAAACGAAACACAAACAGATGAAAGGATTATTCCCCAATCATTGCCTGTGCAAGGGGGAAATCAAGCGGATAACGGGAGTAGGTCAAGCAGTTCAAGCAGCTCTAGCAGTGATTCTGGATCTTCTTCAAGTGATTCTGATAGTGACAGCTCCTCAGCATCTGGATCTGATGCAGGGTCACAAGGGACCTGAATATGCTCTGTCTGATCTCAGATTTTTAGAGTAG 2643 0.4476 MASGPVVGGDDEAKEKQRFGERKVYTRRKVLKGQKKDPNALNAVASTTENNATAATATSTVTNENSINNRTTTVQKSKIGESGEAKSNSDKVVAQPPEQSAVPEDTAQPQMSSRLEDQMQASLRLDNGNTVQPPLEDQDMTLTEGSSRKEDENITQSQLEEGNMVLSNGNSRLEDGNMAQLQVSSRLEDVNMTEPQASTRSGDGNMAQPQVSSKSEDGSAVLPHGGSRSQDGNTTQPQVSLDGNMAQPQLSSRSEDGNIAQLQVSPRSQDIHMVQAQESSKLEGRKSPQPEVNSRMEDGNSPQLQVDSRLEDGVLPRSHVDSRWDEDTVQPPVVLVSDDSYNRQRDEPSSLNVEQEDDGPSSPSRHQEAVPSTRGLTLGNGVVEPQQRDQIKISLSSKSKQQIREIRWKLESELDVVRSLVNRIEGKQRQVGGYRNSNVLVGSGMDNVGGAKRAHSEVASVGVPREPASSRPLHQLSLSMLENSQGISETVEKEKRTPKANQFYHNSEFLLAKDKFPPAESNKKSKLNWKKQGGGEMRHGFGMGSKFFKSCSSLLEKLMKHKHGWVFNAPVDVEGLGLHDYFTIITHPMDLGTVKSRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKGQDVHIMAEQLAKIFEDRWAIIESDYNREMRCGFDYGAAPPAPSPLSRRVSAFTPPPHLDMRRILDRSESMTQTPKPMSFTPSSRTPAPKKPKAKDPYKRDMTFEEKQKLSTNLQSLPSEKLDAIVQIIKKRNLALDQHDDEIEVDIDNVDAETLWELDRFKPYTRVLSRRARHQLWKRFQTKHKQMKGLFPNHCLCKGEIKRITGVGQAVQAALAVILDLLQVILIVTAPQHLDLMQGHKGPEYALSDLRFLE 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01539 880 MobiDBLite consensus disorder prediction 142 156 - -
Phco9g01539 880 MobiDBLite consensus disorder prediction 157 217 - -
Phco9g01539 880 CDD Bromo_plant1 548 645 IPR037377 -
Phco9g01539 880 SMART bromo_6 544 650 IPR001487 GO:0005515
Phco9g01539 880 MobiDBLite consensus disorder prediction 9 35 - -
Phco9g01539 880 MobiDBLite consensus disorder prediction 312 326 - -
Phco9g01539 880 MobiDBLite consensus disorder prediction 40 141 - -
Phco9g01539 880 PRINTS Bromodomain signature 562 575 IPR001487 GO:0005515
Phco9g01539 880 PRINTS Bromodomain signature 612 631 IPR001487 GO:0005515
Phco9g01539 880 PRINTS Bromodomain signature 578 594 IPR001487 GO:0005515
Phco9g01539 880 PRINTS Bromodomain signature 594 612 IPR001487 GO:0005515
Phco9g01539 880 Gene3D - 521 658 IPR036427 GO:0005515
Phco9g01539 880 PANTHER OSJNBA0053K19.4 PROTEIN 385 788 - -
Phco9g01539 880 Pfam Bromodomain 551 635 IPR001487 GO:0005515
Phco9g01539 880 MobiDBLite consensus disorder prediction 293 307 - -
Phco9g01539 880 Pfam Bromodomain extra-terminal - transcription regulation 728 787 IPR027353 -
Phco9g01539 880 MobiDBLite consensus disorder prediction 672 726 - -
Phco9g01539 880 MobiDBLite consensus disorder prediction 1 383 - -
Phco9g01539 880 ProSiteProfiles Bromodomain profile. 559 631 IPR001487 GO:0005515
Phco9g01539 880 SUPERFAMILY Bromodomain 542 653 IPR036427 GO:0005515
Phco9g01539 880 Gene3D - 721 799 IPR038336 -
Phco9g01539 880 MobiDBLite consensus disorder prediction 226 283 - -
Phco9g01539 880 ProSiteProfiles NET domain profile. 718 799 IPR027353 -
Phco9g01539 880 MobiDBLite consensus disorder prediction 696 712 - -
Phco9g01539 880 MobiDBLite consensus disorder prediction 365 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01539 Phco-Chr9 35893893 35898048 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g01539 9 35893893 35898048 Phco9g01539 9 35893893 35898048 ECH
Phco10g01132 10 33063921 33064322 Phco9g01539 9 35893893 35898048 PCT