Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3007 ATGGCTTCTGAGCCTACAGTTGGAGGAGAAGATGGGGCTAAAAAGAAGCAGAGGTTCAATGAGAGTAAGGTTTACAAAAGGAAAACATTCAAAGGCCCCAAGAAAAACCCCAACTTTGGCCACACCGCCACTGACAACACCTCCACTTCTACCGTAACCAAGGATGTTCATGGTATAGGTAACAGCAGCACTGTCAGGAACAGCTGCGTTGATGAGGGCAAGAGCAATAGTGATAATGTTTCGGCTAAGCAACCGGTGCAGGTTGTGGTGCTGGAGGATGGAAATTCAGCTCAGCAGCAAGTGAGTTCAGGGTTGGAGGATGGGAAATCGTCTCAGCTGCAAGTGGAGGATGGGAATTTGGCTCAGCCGCACGAGGGTTCAAGGTTAGAGGATGGGAGTACGTCTCAGCCGCAATTGGAGGATAGGAATTTGGCTCAGCCTCATGGGGGTTCAGGACCAGAGGTTGGGAATTCAGCTCAGTGGCAAGTGAGTGATGGGAATTCAGCTCAGCAGCAAGTGAGTCCAAGACTGGAGGGTGGAAATTTGGCCGAGCCGCTCCAGGGTTCGAGGTTAGAGGATGGGAGTACGCCTCAGCCACAATTGGAGGATAGGAATTTGGCTCAGCCTCATGGGAGTTCGGGATCAGAGGATGGGAATTCAGCTCAGCAACCAGTGAGTCCAAGGCTGGAGGATGGGAATTCAGCTCAGCAGCAAGTGAACTCAAGACCGGAGGATGGGAATTCTTCTCAGGTGAGTTCAAGATTAGAGGATGGGAATTTGGCTCAGCAGTTGCATGTGGATTCAACATTGGAGGATAAGAATTCCCCTCAGCCACAAATGAATGCAACATTGGAGGATGAGCATTCTCCTCAACTGGAAGTGAATTCCCAGTTGGAGGATAGGAGATCTCCTCAGCCGCAAGAGAATTCAAGGTTGGAGGATGTGAATTCCTCGCAGATGCAAGTGAATTTGAGATTGGAGGATGGTAGTTTGCCTCAGCCACCAGTGAATTCAAGATTGCAGGATGAGAGTATGGCTCAACCGCTGGTTTCCGATGACTCGCGCAGTCATCAGCTGGATGAACCTTCTAGCCTCAATGTTCAGCAGGAGCATGATGGACCTTCTAGCCCCAGCCATCGGCAGGAGGTAGTTCCCATCACCCGGGACCTGCCATCGATGAATGGGGCTGTGGAACCATTGTTGGAGGACCGAATCAAGATCAATTTGGCCTCAAAGTCAAGGCAAGAGATGCAGGAGCTACGGTGGAAGCTTGAAAGTGAGCTTGGTGTTGTAAGAAGTTTGGTCAAGAGGATTGAAGTGAAACAGGGGCAGGTTAGTGGGGGTGGCAATTTGAATGTTTTCATGGGTGGTGGGATTGAAAGTGGTGGTGGAGCAAAGCGTGCTCACTCAGAGGTGGCATCTGCTGGTGTTCCACGGCAAATTACCAGGCCTTTGCACCATTTAAGTTTGCCATTATTAGAGAATAATCAAGGTGTCAGTGAAAATCTAGAGAAGGAGAAGAGAACGCCTAAAGCCAACCAGTTTTATCATAACTCAGAGTTCTTGCTTGCGAAAGATAAATTTCCACCTGCAGAGAGTAACAAGAAGTCGAAATTGCATTGGAAGAAGCAAGGTGGTGGAGAATTCGGACATGGTCTTCGGATGGGATCTAAGTTTTTCAAGAGCTGTAGTTCACTACTTGAAAAGCTTACGAAGCACAAGTTTGGTTGGGTGTTTAATACTCCTGTTGATGTTGAGGGTCTTGGTTTGCATGATTATTTTACTATCATTACTCACCCAATGGACTTGGGAACTGTGAAGACAAGGCTGAACAAAAATTGGTACAAATCACCAAAGGAATTTGCAGAGGATGTGAGACTCACTTTTCGTAATGCTATGACATATAATCCGGAGGGACAAGATGTTCATGTAATGGCAGAACAGTTATCAAAGATATTTGAGGACAGATGGGCTATAATAGAGTCAGATTACAATCGTGAGATGAGATATGGTGTAAGTTATGGGGTAGCACCCCCTGCACCTTCACCTCTGTCTAGAAAGGTTCCTGCATTTCCTCCCCCGCCTCTTGATATGAGAAGGATTTTGGATAGATCAGAATCTTTGATACGAACTCCAAAAACCATGAGCATTACTCCATCAAGTAGAACCCCAGCTCCAAAAAAGCCAAAGGCGAAGGATCCTCATAAAAGAGATATGACATATGAGGAAAAGCAAAAGCTAAGCACAAACCTACAGAGTTTACCTCCAGAGAAGCTGGATGCTATTGTGCAAATCATTAAGAGGAGAAGTTTAGCACTTAGTCAACATGATGATGAAATTGAAGTGGACATTGATAGTGTAGATGCTGAGACTCTCTGGGAACTCGATAGATTTGTGACTAACTATAAGAAAAGTTTAAGCAAAAACAAGAGGAAGGCTGAACTTGCTCGGGCTAGAGCAGAAGCGTTGCAGAATGCCATTGACAAGAACCAAGCACAAGCTGTTGTAGAGATTCCCAGAGACTCACAAACAGATGAAAGAAATGCTCCCCCGGTCTTGCCTGGGCAAGGTGGAATTGAAGCCAATAATCAGAGTAGGTCAAGTAGTTCAAGCAGCTCAAGCAGTGATTCGGGATCTTCTTCAAGCGATTCTGATAGTGATAGTTCTTCAGCATCTGGATCAGATGCAGAGTCGCAAGGGACCTGA 2706 0.4656 MASEPTVGGEDGAKKKQRFNESKVYKRKTFKGPKKNPNFGHTATDNTSTSTVTKDVHGIGNSSTVRNSCVDEGKSNSDNVSAKQPVQVVVLEDGNSAQQQVSSGLEDGKSSQLQVEDGNLAQPHEGSRLEDGSTSQPQLEDRNLAQPHGGSGPEVGNSAQWQVSDGNSAQQQVSPRLEGGNLAEPLQGSRLEDGSTPQPQLEDRNLAQPHGSSGSEDGNSAQQPVSPRLEDGNSAQQQVNSRPEDGNSSQVSSRLEDGNLAQQLHVDSTLEDKNSPQPQMNATLEDEHSPQLEVNSQLEDRRSPQPQENSRLEDVNSSQMQVNLRLEDGSLPQPPVNSRLQDESMAQPLVSDDSRSHQLDEPSSLNVQQEHDGPSSPSHRQEVVPITRDLPSMNGAVEPLLEDRIKINLASKSRQEMQELRWKLESELGVVRSLVKRIEVKQGQVSGGGNLNVFMGGGIESGGGAKRAHSEVASAGVPRQITRPLHHLSLPLLENNQGVSENLEKEKRTPKANQFYHNSEFLLAKDKFPPAESNKKSKLHWKKQGGGEFGHGLRMGSKFFKSCSSLLEKLTKHKFGWVFNTPVDVEGLGLHDYFTIITHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFRNAMTYNPEGQDVHVMAEQLSKIFEDRWAIIESDYNREMRYGVSYGVAPPAPSPLSRKVPAFPPPPLDMRRILDRSESLIRTPKTMSITPSSRTPAPKKPKAKDPHKRDMTYEEKQKLSTNLQSLPPEKLDAIVQIIKRRSLALSQHDDEIEVDIDSVDAETLWELDRFVTNYKKSLSKNKRKAELARARAEALQNAIDKNQAQAVVEIPRDSQTDERNAPPVLPGQGGIEANNQSRSSSSSSSSSDSGSSSSDSDSDSSSASGSDAESQGT* 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3007 901 Pfam Bromodomain extra-terminal - transcription regulation 739 800 IPR027353 -
Lja3g3007 901 MobiDBLite consensus disorder prediction 839 901 - -
Lja3g3007 901 MobiDBLite consensus disorder prediction 39 84 - -
Lja3g3007 901 PRINTS Bromodomain signature 590 606 IPR001487 GO:0005515
Lja3g3007 901 PRINTS Bromodomain signature 574 587 IPR001487 GO:0005515
Lja3g3007 901 PRINTS Bromodomain signature 606 624 IPR001487 GO:0005515
Lja3g3007 901 PRINTS Bromodomain signature 624 643 IPR001487 GO:0005515
Lja3g3007 901 MobiDBLite consensus disorder prediction 128 142 - -
Lja3g3007 901 CDD Bromo_plant1 560 657 IPR037377 -
Lja3g3007 901 Pfam Bromodomain 563 647 IPR001487 GO:0005515
Lja3g3007 901 Gene3D - 732 813 IPR038336 -
Lja3g3007 901 MobiDBLite consensus disorder prediction 360 374 - -
Lja3g3007 901 ProSiteProfiles NET domain profile. 729 810 IPR027353 -
Lja3g3007 901 MobiDBLite consensus disorder prediction 91 118 - -
Lja3g3007 901 MobiDBLite consensus disorder prediction 334 353 - -
Lja3g3007 901 PANTHER OSJNBA0053K19.4 PROTEIN 1 896 - -
Lja3g3007 901 MobiDBLite consensus disorder prediction 153 177 - -
Lja3g3007 901 SUPERFAMILY Bromodomain 554 665 IPR036427 GO:0005515
Lja3g3007 901 MobiDBLite consensus disorder prediction 726 744 - -
Lja3g3007 901 MobiDBLite consensus disorder prediction 191 326 - -
Lja3g3007 901 MobiDBLite consensus disorder prediction 709 723 - -
Lja3g3007 901 PANTHER TRANSCRIPTION FACTOR GTE4 1 896 - -
Lja3g3007 901 SMART bromo_6 553 662 IPR001487 GO:0005515
Lja3g3007 901 MobiDBLite consensus disorder prediction 709 748 - -
Lja3g3007 901 Gene3D - 540 670 IPR036427 GO:0005515
Lja3g3007 901 MobiDBLite consensus disorder prediction 9 27 - -
Lja3g3007 901 MobiDBLite consensus disorder prediction 858 901 - -
Lja3g3007 901 Coils Coil 803 833 - -
Lja3g3007 901 MobiDBLite consensus disorder prediction 1 384 - -
Lja3g3007 901 ProSiteProfiles Bromodomain profile. 571 643 IPR001487 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3007 Lja-Chr3 55912168 55915843 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3007 - K11684 gmx:100780669 1024.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3007 3 55912168 55915843 Lja3g3007 3 55912168 55915843 ECH
Lja3g3007 3 55912168 55915843 Lja3g3007 3 55912168 55915843 PCT