Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu10g0309 . . . . . . . . . . . . . . . . . . . . . . . . . Gso3g0774 . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu2g0638 . . . . . . . . . Vra9g0889
Pvu10g0310 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0311 . . Adu02g00152 . . Ahy12g1969 Ahy2g1678 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja3g3275 . . . . Mtr8g0291 . . . . Pste6g01127 . . . . . . . . . . . . . . .
Pvu10g0312 . . . . . Ahy12g1972 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mtr8g0290 . Phco1g01771 . Psa4g4757 . . . . . . . . . . . . . . . Vra9g0888
Pvu10g0313 . . . . . Ahy12g1975 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja3g3274 . . . . . . . . . . . . . . Ssu2g0640 . . . . . . . . . .
Pvu10g0314 . . Adu09g00670 Aed2g1576 Aev09g0345 Ahy19g0878 Ahy9g0641 Aip09g00963 . Amo19g0828 . Apr10g0019 Arst9g00895 . . . Car07g03249 Cca01g01319 . . . . Gma03g00808 Gma16g00751 Gso16g0681 Gso3g0776 Lal14g0187 . Lal19g0074 Lan12g0045 Lan1g0891 . . Lasa4g00181 . . . . . . Mepo1g04483 Mesa29g05162 . Mtr8g0285 . Phco1g01773 . . Pste6g01133 . Rops4g00278 . Spst4g01579 Ssu2g0641 . . Trre15g00311 Tsu08g00263 Vian9g01318 Vifa4g01551 Vimu9g01456 . Vivi7g03936 .
Pvu10g0315 . . . . . . . . . . . . Arst2g00203 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0316 . . Adu09g00669 Aed2g1577 Aev09g0346 Ahy19g0877 Ahy9g0639 Aip09g00961 . Amo19g0827 . Apr10g0021 Arst9g00894 . . Bva02g01118 Car07g03250 . . . . . Gma03g00810 . . Gso3g0779 . . . . . . . Lasa4g00182 . . . . . . Mepo1g04486 . . Mtr8g0283 . . . . Pste7g00497 . . . . . . . . Tsu08g00261 . . Vimu9g01457 . . .
Pvu10g0317 . . . . . . . . . . . Apr10g0307 . . . . . . . . . . . Gma16g00750 Gso16g0680 . Lal14g0186 . . . . . Lapu10g00960 . . . . . Lja3g4369 . . . . . . Phco1g01778 . . . . . . Spst4g01581 Ssu2g0645 . . . . . . Vimu9g01460 . . .
Pvu10g0318 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Spst4g01128 . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Apr Apr10g0019 Chr10 396853 406528 -
Gso Gso16g0681 Chr16 9940932 9984270 +
Ahy Ahy12g1969 Chr12 101920309 101930823 +
Lal Lal19g0074 Chr19 575683 581629 +
Pvu Pvu10g0309 Chr10 4334014 4334491 -
Gso Gso3g0774 Chr3 27912000 27916929 +
Ssu Ssu2g0638 Chr2 36316410 36316922 +
Vra Vra9g0889 Chr9 10578909 10583066 +
Pvu Pvu10g0310 Chr10 4354588 4356195 -
Pvu Pvu10g0311 Chr10 4365771 4369561 -
Adu Adu02g00152 Chr02 1706054 1707793 +
Ahy Ahy12g1969 Chr12 101920309 101930823 +
Ahy Ahy2g1678 Chr2 87549880 87553431 +
Lja Lja3g3275 Chr3 63897339 63903134 +
Mtr Mtr8g0291 Chr8 3184040 3192494 +
Pste Pste6g01127 Chr6 4691646 4694493 -
Pvu Pvu10g0312 Chr10 4375277 4379568 -
Ahy Ahy12g1972 Chr12 101980777 101995415 +
Mtr Mtr8g0290 Chr8 3157392 3164297 -
Phco Phco1g01771 Chr1 57081407 57082415 -
Psa Psa4g4757 Chr4 418183571 418189318 +
Vra Vra9g0888 Chr9 10573339 10577274 +
Pvu Pvu10g0313 Chr10 4380448 4382284 +
Ahy Ahy12g1975 Chr12 102087403 102092786 -
Lja Lja3g3274 Chr3 63833805 63843775 +
Ssu Ssu2g0640 Chr2 36360500 36360991 -
Pvu Pvu10g0314 Chr10 4383724 4394180 -
Adu Adu09g00670 Chr09 9213485 9217325 +
Aed Aed2g1576 Chr2 19843626 19849236 -
Aev Aev09g0345 Chr09 2945680 2950782 -
Ahy Ahy19g0878 Chr19 13368232 13372204 +
Ahy Ahy9g0641 Chr9 9610981 9614604 +
Aip Aip09g00963 Chr09 13314397 13318297 +
Amo Amo19g0828 Chr19 13466505 13470639 +
Apr Apr10g0019 Chr10 396853 406528 -
Arst Arst9g00895 Chr9 9248758 9252552 +
Car Car07g03249 Chr07 60101327 60105686 +
Cca Cca01g01319 Chr01 24686501 24705446 -
Gma Gma03g00808 Chr03 29461670 29468736 -
Gma Gma16g00751 Chr16 10052391 10064268 +
Gso Gso16g0681 Chr16 9940932 9984270 +
Gso Gso3g0776 Chr3 28018980 28025950 -
Lal Lal14g0187 Chr14 2074757 2080285 +
Lal Lal19g0074 Chr19 575683 581629 +
Lan Lan12g0045 Chr12 398311 414270 -
Lan Lan1g0891 Chr1 19707618 19711979 -
Lasa Lasa4g00181 Chr4 7052379 7055720 +
Mepo Mepo1g04483 Chr1 52587490 52591990 +
Mesa Mesa29g05162 Chr29 84992775 84996427 +
Mtr Mtr8g0285 Chr8 3120592 3124846 -
Phco Phco1g01773 Chr1 57141532 57148846 -
Pste Pste6g01133 Chr6 4726127 4730520 -
Rops Rops4g00278 Chr4 8516939 8523115 +
Spst Spst4g01579 Chr4 55115824 55120672 -
Ssu Ssu2g0641 Chr2 36367443 36374163 -
Trre Trre15g00311 Chr15 2130262 2133952 -
Tsu Tsu08g00263 Chr08 2320103 2324088 -
Vian Vian9g01318 Chr9 28194307 28201175 -
Vifa Vifa4g01551 Chr4 453702472 453706064 +
Vimu Vimu9g01456 Chr9 23416431 23422658 -
Vivi Vivi7g03936 Chr7 105325553 105329491 +
Pvu Pvu10g0315 Chr10 4396430 4398061 -
Arst Arst2g00203 Chr2 1696625 1699862 +
Pvu Pvu10g0316 Chr10 4404523 4406792 -
Adu Adu09g00669 Chr09 9163041 9165976 -
Aed Aed2g1577 Chr2 19858444 19861227 +
Aev Aev09g0346 Chr09 2955790 2961930 +
Ahy Ahy19g0877 Chr19 13327322 13330307 -
Ahy Ahy9g0639 Chr9 9555575 9558520 -
Aip Aip09g00961 Chr09 13276127 13278979 -
Amo Amo19g0827 Chr19 13425710 13428762 -
Apr Apr10g0021 Chr10 437620 439652 -
Arst Arst9g00894 Chr9 9198398 9201299 -
Bva Bva02g01118 Chr02 15399559 15401258 -
Car Car07g03250 Chr07 60115860 60117524 +
Gma Gma03g00810 Chr03 29557477 29560564 +
Gso Gso3g0779 Chr3 28113268 28116443 +
Lasa Lasa4g00182 Chr4 7080426 7081824 +
Mepo Mepo1g04486 Chr1 52616122 52617920 +
Mtr Mtr8g0283 Chr8 3102209 3104024 -
Pste Pste7g00497 Chr7 4703084 4710975 +
Tsu Tsu08g00261 Chr08 2303239 2305200 -
Vimu Vimu9g01457 Chr9 23435142 23437518 -
Pvu Pvu10g0317 Chr10 4414611 4418394 -
Apr Apr10g0307 Chr10 7258184 7261676 -
Gma Gma16g00750 Chr16 10006251 10012651 -
Gso Gso16g0680 Chr16 9896180 9902691 -
Lal Lal14g0186 Chr14 2068057 2071881 -
Lapu Lapu10g00960 Chr10 11380704 11384023 -
Lja Lja3g4369 Chr3 84970027 84974552 +
Phco Phco1g01778 Chr1 57187930 57191234 -
Spst Spst4g01581 Chr4 55157885 55160747 +
Ssu Ssu2g0645 Chr2 36548976 36552337 +
Vimu Vimu9g01460 Chr9 23452879 23454986 -
Pvu Pvu10g0318 Chr10 4419303 4420849 +
Spst Spst4g01128 Chr4 44407898 44410433 -
Arst Arst2g00203 Chr2 1696625 1699862 +