Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu10g0299 . . . Aed2g0804 . Ahy12g1943 . Aip02g02174 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mesa29g05157 . Mtr8g0302 . . . . . . . . . . . . . . . . . . . .
Pvu10g0300 . . . . . Ahy12g1945 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Psa4g4813 . . . . . . . . . . . . . . . Vra9g0902
Pvu10g0301 . . . . . Ahy12g1946 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mtr8g0301 . . . . . . . . . . . . . . . . . . . Vra9g0901
Pvu10g0302 . . . . . Ahy12g1951 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco1g01735 . . . . . . . . . . . . . . . . . .
Pvu10g0303 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja3g4374 . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0304 . . . . . Ahy12g1954 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mtr8g0297 . Phco1g01736 . . . . . . . . . . . Tsu08g00271 . . Vimu9g01444 . . .
Pvu10g0305 . . . . . Ahy12g1960 Ahy2g1682 . . . . Apr10g0310 . . . . . . . . . . . . . . . . . . . . . Lasa4g00176 . . . . Lja3g4373 . . . . . . . . . . . . . . . . . . . . . Vimu9g01105 . Vivi7g03928 .
Pvu10g0306 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa4g00316 . . . . . . Mepo1g04475 . . Mtr8g0294 Phac10g00307 . . Psa4g4754 . . . . . Ssu2g0633 . . . Tsu08g00269 . . . . Vivi7g03930 Vra9g0891
Pvu10g0307 . . . . . . Ahy2g1679 . . . . . . . . . . . . . . . Gma03g00803 . . Gso3g0771 . . . . . . . . . . . . Lja3g3278 . Mepo1g04477 . . Mtr8g0292 . . . Psa4g4755 . . . . . . . . . . . . Vimu9g01448 . Vivi7g03932 Vra9g0890
Pvu10g0308 . . . . . Ahy12g1965 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tsu08g00267 . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Pvu Pvu10g0299 Chr10 4161096 4163176 +
Aed Aed2g0804 Chr2 6078124 6078402 -
Ahy Ahy12g1943 Chr12 101276645 101288007 +
Aip Aip02g02174 Chr02 91962181 91966610 -
Mesa Mesa29g05157 Chr29 84863856 84868127 +
Mtr Mtr8g0302 Chr8 3310919 3316926 -
Pvu Pvu10g0300 Chr10 4183725 4187624 -
Ahy Ahy12g1945 Chr12 101366802 101376754 -
Psa Psa4g4813 Chr4 419403796 419406114 -
Vra Vra9g0902 Chr9 10778631 10782572 -
Pvu Pvu10g0301 Chr10 4194497 4198156 -
Ahy Ahy12g1946 Chr12 101411390 101418192 -
Mtr Mtr8g0301 Chr8 3303184 3309842 -
Vra Vra9g0901 Chr9 10772240 10776632 -
Pvu Pvu10g0302 Chr10 4245377 4248629 +
Ahy Ahy12g1951 Chr12 101437155 101445673 -
Phco Phco1g01735 Chr1 55819532 55820076 +
Pvu Pvu10g0303 Chr10 4249527 4253271 -
Lja Lja3g4374 Chr3 85019270 85023985 -
Pvu Pvu10g0304 Chr10 4280101 4283144 -
Ahy Ahy12g1954 Chr12 101481943 101486281 -
Mtr Mtr8g0297 Chr8 3275439 3281163 +
Phco Phco1g01736 Chr1 55820885 55822503 +
Tsu Tsu08g00271 Chr08 2394407 2406422 +
Vimu Vimu9g01444 Chr9 23090111 23090518 +
Pvu Pvu10g0305 Chr10 4286913 4288227 -
Ahy Ahy12g1960 Chr12 101690700 101699957 +
Ahy Ahy2g1682 Chr2 87625979 87633798 +
Apr Apr10g0310 Chr10 7307635 7308132 -
Lasa Lasa4g00176 Chr4 6904570 6906723 -
Lja Lja3g4373 Chr3 85008062 85018324 -
Vimu Vimu9g01105 Chr9 18454061 18458733 +
Vivi Vivi7g03928 Chr7 105250136 105256270 -
Pvu Pvu10g0306 Chr10 4290078 4297923 -
Lasa Lasa4g00316 Chr4 10827387 10827887 -
Mepo Mepo1g04475 Chr1 52532268 52532738 +
Mtr Mtr8g0294 Chr8 3202508 3203002 -
Phac Phac10g00307 Chr10 4206560 4219451 -
Psa Psa4g4754 Chr4 418139162 418139953 -
Ssu Ssu2g0633 Chr2 36047752 36048252 +
Tsu Tsu08g00269 Chr08 2363180 2363698 -
Vivi Vivi7g03930 Chr7 105276288 105288756 -
Vra Vra9g0891 Chr9 10611655 10615478 +
Pvu Pvu10g0307 Chr10 4294164 4296012 -
Ahy Ahy2g1679 Chr2 87553091 87557144 -
Gma Gma03g00803 Chr03 29230069 29233328 +
Gso Gso3g0771 Chr3 27775252 27777113 +
Lja Lja3g3278 Chr3 64049196 64061605 +
Mepo Mepo1g04477 Chr1 52554604 52560405 -
Mtr Mtr8g0292 Chr8 3196850 3201664 -
Psa Psa4g4755 Chr4 418160536 418166627 +
Vimu Vimu9g01448 Chr9 23119511 23129489 +
Vivi Vivi7g03932 Chr7 105276288 105288756 -
Vra Vra9g0890 Chr9 10587511 10590357 +
Pvu Pvu10g0308 Chr10 4328553 4330784 -
Ahy Ahy12g1965 Chr12 101837159 101855902 +
Tsu Tsu08g00267 Chr08 2355505 2361423 -