Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0310 ATGGGTATCCTACATGGTACAAGCAAAAGAATGAACAGTTCAACATGTAATCTGAATGTAAAGATTGACTCTCTACAAAACAATAATCAAGAAGAATCTGTAAGAAATTCCCTTACTAATGATCAAGTGCAAAGACTCATACAACTATTAGAATCCTCAACAATTCATGGTATCAATCAGATTCAAAGGCATAACAATGAAACTGCTAGAACTAAGATATCAACAAAAGGTAAGAATCCATGGATCCTTAACACTAGAGGGACACCATTCTTCTTCTCCAATTTTCCTTTCGATATCAAAGAATCAGATTTGTGGAAGATTTTCCGAAGATGGGGTAGGGTGAGTGATGTTTTTATATCTAGAAGATTAAACATTAAGAAGCAAAGGTTTGGTTTTGTGAGGTTTCAGGGGGTCCAGAATATCAGGGAGCTAGAAAATCACTTGAATACAATATGGATTGGGAGCTGGAAACTGGTCGCAAATAGACCAAAATACAACAGAAACAGAGTACATACACAAAACAGGGCAAGTGTGAATGCCATACATTTTAGAGTAGAAGAAACATCCAGAGATTGGCTAAAGAAGTGTTACATAGGGAGAGTCTCAAATTTAAGCAAAGTTTCATGTTTGAATGAAAGCTTGATTTTGGGAGGCCTAAGCCACATAAAGGTTAAATTTTTGGGCGGGTTCCATGTGCTATTGATGGGGGAAAATGAAAAGAAGATCCAAGAAGCTATTGAGGAAAATAAACAGTGGTTCGAAGAACTGTTTGATACTATAATCCCATGGGAAGAGCAATTTGTCGCGGTGGATAAACTGGTTTGGGTGAGATGTAGAGGCTTACCGTTGAAGTTACGGAATACAGATTGCTTCAAACATATAGCAGCATTAATGGGAACTCTTATTGAGGTTGATAAAGCAACACTGGAACTGGAGGAACTCAAGTATGCAAGGTTTAAAATTAGAGTGTTTGTGGGTTGTGAGGCAAAGTAA 993 0.3736 MGILHGTSKRMNSSTCNLNVKIDSLQNNNQEESVRNSLTNDQVQRLIQLLESSTIHGINQIQRHNNETARTKISTKGKNPWILNTRGTPFFFSNFPFDIKESDLWKIFRRWGRVSDVFISRRLNIKKQRFGFVRFQGVQNIRELENHLNTIWIGSWKLVANRPKYNRNRVHTQNRASVNAIHFRVEETSRDWLKKCYIGRVSNLSKVSCLNESLILGGLSHIKVKFLGGFHVLLMGENEKKIQEAIEENKQWFEELFDTIIPWEEQFVAVDKLVWVRCRGLPLKLRNTDCFKHIAALMGTLIEVDKATLELEELKYARFKIRVFVGCEAK* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0310 330 Gene3D - 88 173 IPR012677 -
Pvu10g0310 330 PANTHER RNA RECOGNITION MOTIF 86 318 - -
Pvu10g0310 330 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 165 IPR000504 GO:0003723
Pvu10g0310 330 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 86 318 - -
Pvu10g0310 330 Pfam Domain of unknown function (DUF4283) 194 321 IPR025558 -
Pvu10g0310 330 CDD RRM_SF 91 161 - -
Pvu10g0310 330 Coils Coil 235 255 - -
Pvu10g0310 330 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 152 IPR000504 GO:0003723
Pvu10g0310 330 SUPERFAMILY RNA-binding domain, RBD 91 175 IPR035979 GO:0003676
Pvu10g0310 330 SMART rrm1_1 89 161 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0310 Pvu-Chr10 4354588 4356195 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0310 - - pvu:PHAVU_010G029500g 673.315