Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01773 ATGGGGCCAAACGCAGCGGCGGCGGAACAAGCGGAGAAGCTCCGAATTAACGGAAATACTTACTTCAAGAAAGACCGTTTTGGTGCCGCCATCGATGCTTACACCGAGGCGATTACGCTGTGCCCTAATGTTCCGATTTATTGGACGAATCGTGCGCTGTGCCATCTCAAGCGCAATGACTGGGAGAGAGTAGAGGAAGATTCTCGGAAGGCAATTCAGTTGGACAGCAATTCAGTTAAGGCCCACTATATGTTGGGGCTCGCATTGCTTCAGAGAAAAGAATCTGCCAAGGGAATAAAAGAATTGGAGAAGGCTTTGGATCTCGGGAGGGGTGCCAATCCCAAGGGCTATATGGTAGAAGAAATATGGCAAGAGCTTGCAAAGGCAAAATACCATGAGTGGGAGCGATCATCGTCCAAGCGATCATGGGAATTGCAGAGTTTGAAAGAAGCTTGCGAGTCTGCTCTGAAGGAAAAACATTTTCTCGAATTCTCCCAAATGGAAGGATTTGTAGATGATCCTACTACTTCCCATTCGGAACAATTAGAGGCTTTAGAAGTAGTCTTCAATATAGCTGCAGAAGCCGATACACCTACTGAGGTGCCAGATTATTTATGTTGTAGAATCACACTCGACATTTTTCATGATCCTGTAATCACTCCAAGTGGGCTTACATATGAAAGAGCAGTGATTCTTGAACACCTTCAGAAGGTGGGTAAATTCGACCCAATCACGCGGGAACCACTTGATCAATCACAGTTAGTGCCAAACTTGGCCATTAAGGAAGCAGTTCAGGCATTCTTGGACAAACATGGTTGGGCTTACAAGGTAGACTGA 837 0.46 MGPNAAAAEQAEKLRINGNTYFKKDRFGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWERVEEDSRKAIQLDSNSVKAHYMLGLALLQRKESAKGIKELEKALDLGRGANPKGYMVEEIWQELAKAKYHEWERSSSKRSWELQSLKEACESALKEKHFLEFSQMEGFVDDPTTSHSEQLEALEVVFNIAAEADTPTEVPDYLCCRITLDIFHDPVITPSGLTYERAVILEHLQKVGKFDPITREPLDQSQLVPNLAIKEAVQAFLDKHGWAYKVD 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01773 278 ProSiteProfiles TPR repeat profile. 11 44 IPR019734 GO:0005515
Phco1g01773 278 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 7 276 IPR045200 GO:0000209|GO:0061630
Phco1g01773 278 ProSiteProfiles U-box domain profile. 200 274 IPR003613 GO:0004842|GO:0016567
Phco1g01773 278 Pfam U-box domain 201 273 IPR003613 GO:0004842|GO:0016567
Phco1g01773 278 Gene3D Tetratricopeptide repeat domain 4 141 IPR011990 GO:0005515
Phco1g01773 278 SMART tpr_5 79 112 IPR019734 GO:0005515
Phco1g01773 278 SMART tpr_5 45 78 IPR019734 GO:0005515
Phco1g01773 278 SMART tpr_5 11 44 IPR019734 GO:0005515
Phco1g01773 278 Pfam Tetratricopeptide repeat 80 108 IPR019734 GO:0005515
Phco1g01773 278 Pfam Tetratricopeptide repeat 18 43 IPR019734 GO:0005515
Phco1g01773 278 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 277 IPR013083 -
Phco1g01773 278 SMART Ubox_2 204 267 IPR003613 GO:0004842|GO:0016567
Phco1g01773 278 SUPERFAMILY RING/U-box 194 275 - -
Phco1g01773 278 SUPERFAMILY TPR-like 9 129 IPR011990 GO:0005515
Phco1g01773 278 CDD RING-Ubox_CHIP 201 271 IPR045202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01773 Phco-Chr1 57141532 57148846 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01834 3 42121254 42124564 Phco1g01773 1 57141532 57148846 PCT