Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0638 ATGGAATTCGCATCGTCTTCATCATCCTTCTCAAAATCCGAACCCCAATGGATATACGATGTGTTCATCAATTTTAGGGGAGAAGACACCCGTAGGAAGTTCGTTTCTCATCTTTATCATGCCCTCTCAACAAATGCTGGAGTCAACACTTTCTTTGACGAGGAGAATCTACCCAGGGGAATGGAGCTGGGAGAACTAGCGCGAGGAATAGAAAGGTCTCAGATAGCAATCGTTGTTTTCTCCAAAACCTATACTGAATCTACTTGGTGTCTTCGTGAGCTTGAAAAAATCATTGAATGCCACGAAACTTATGGCCAAATAGTCGTGCCCGTATTTTACTATATTGACCCATCCGATGTACGTCATCAGAACGGGGATTTTGGAAGAGCATTGAGAGCAGCTGCAGAAAAAAGATATTCAGGAGAACATCTGGAAGATGCGTTGTCGAGGTGGAGACGCGCACTCACCAAAGCTGCAGACTTCTCTGGTTGGGATGTGGAGAATTTCAGGTAA 513 0.4444 MEFASSSSSFSKSEPQWIYDVFINFRGEDTRRKFVSHLYHALSTNAGVNTFFDEENLPRGMELGELARGIERSQIAIVVFSKTYTESTWCLRELEKIIECHETYGQIVVPVFYYIDPSDVRHQNGDFGRALRAAAEKRYSGEHLEDALSRWRRALTKAADFSGWDVENFR 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0638 170 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 164 IPR035897 -
Ssu2g0638 170 Gene3D - 11 170 IPR035897 -
Ssu2g0638 170 PANTHER TOLL-INTERLEUKIN-RESISTANCE (TIR) DOMAIN FAMILY PROTEIN 8 168 - -
Ssu2g0638 170 PANTHER TMV RESISTANCE PROTEIN N-LIKE 8 168 - -
Ssu2g0638 170 ProSiteProfiles TIR domain profile. 17 170 IPR000157 GO:0007165
Ssu2g0638 170 Pfam TIR domain 19 157 IPR000157 GO:0007165
Ssu2g0638 170 SMART till_3 18 161 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0638 Ssu-Chr2 36316410 36316922 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0638 21 170 Miscellaneous Gene Families AT4G19920 36.667 2.48e-26 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0638 - - gmx:100783105 256.914