LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu02g00152	ATGATCTTCAAATCCCATTTCAAAAAACAGTTCCTTTTCCCTCCAACACTTTTCTCATTTGTAACTCAATGCTTCAGCAACTATTCTCATGAACCACATCCATGTAATCATTCCCTTAGCAGACTCAAAGCTTTTGTTCCAATTCCTAATGAACCCAACTTCAGGGACCCTGAAATTGTTCATTTGTTTTGTGCTAAAGCCCTCAAAGTTGCTGCTATAAGGGCTTTTCTCCCTGAAGGGAAACAGTTGCATGCCCATTTGATAAAGTTTGGTTTTTGTCATGTTCTGTCATTGCAAAATCAGATCTTGAGTATATACCTTAAATGCAACGAAACCAAAGATGCACTGAAACTGTTTGATGAATTGCCTGGGAGAAATGTGATCTCGTGGAATATCGTGATCCGTGGCGTTGTTGGATGTGGAAATGAAAATTTCTTGAATCCTTATCTGGGGTTTTCTTATTTCAAGCGGATGTTGTTCGAAAAGGTGGCTCCGGATGATATAACATTGAATGCTTTGATTGGTGTATGTGCAAAGCTTCATGATATCGAAATTGGAGTACAACTGCACTGTTTTGCAATGAAAAGAGGACTTGATTTGGATTGTTTTGTAGGTAGTGCTTTGGTTGATTTTTATGCAAAATTTGGTTTGGTTGAGAATTCAAGGATGGTTTTTTGTGCTGTTACACGTAGAGATTTGGTTATGTTGATTGTCATGATTTCTTGTTATGCCCTGAATTGTTTACCAGAAGAGGCCTTTAGCATTTTCAACTCAATGAGATCGGATGGTGCTAATGGCGACGAATTCACTTTTAGCAGCCTGCTAAGTATATGTGATATTTTCGAATATTATGATTTTGGAAAGCAAGCTCATAGTCTTATTCTGAAACTGTCATTTGAATCCGATATTCTAGTGGCGAGTGCATTAATCAATATGTACGCAAAAAATGAAGATGTAATTGATGCAAAGAGAGTATTTGACAGGATGGCGATTCGAAATGTTGTGGCATGGAATACCGTGATTGTTGGGTGTGGAAATTGTGGTGAAGTGATTGATGTTATGAAGATTCTCAGAGATATGTTACTCGAAGGATTTTTCCCGGATGAACTCACTATTTCCAGCGTTCTTAGCTCGTGTGGCTATGCTTCTGCCATAACTGAAACTCAGCAAGCTCATGCCTTAGCAGTTAAGCTATCATTTCAAGAATTTGTATCTGTTTCCAATTCTTTGATTACTGCATACTCCAAGTGTGGTAACATAACCAATGCATTCAAATGCTTCAGATTGATGTTAGAACCTGATCTTGTTACATACACTTCACTGATAAATGCATATGCATTCCATGGTCTTGGCAAAAAAGCAACTGAGATGTTTGAGAAGATGCTATCTTGCAGCATAAAACCTGACCGGATTTCTTTTCTTGGCATTCTCTCTGCTTGTGTGCATTGTGGATTCGTGAACGCAGGACTGCACTACTTCAAATTAATGACAGATGTGTATCATATTATTCCTGATTCAGATCACTATACTTGCCTTATTGATCTCCTTGGAAGACATGGTTTCATAAACGAAGCCTTTGAATTCTTGAAATCAATTCCAATTCAAGCTGAATCAAACATGTTTGGAGCATTCATTGGGTCTTGTAAACTGCATGAAAATATAGAACTGGCTAAATTGGCAGCAGGAAAGCTTTTTGCCATAGAGCCAGAGAAGATTGTGAAACTATGCTGTCATGGCTAA	1740	0.3805	MIFKSHFKKQFLFPPTLFSFVTQCFSNYSHEPHPCNHSLSRLKAFVPIPNEPNFRDPEIVHLFCAKALKVAAIRAFLPEGKQLHAHLIKFGFCHVLSLQNQILSIYLKCNETKDALKLFDELPGRNVISWNIVIRGVVGCGNENFLNPYLGFSYFKRMLFEKVAPDDITLNALIGVCAKLHDIEIGVQLHCFAMKRGLDLDCFVGSALVDFYAKFGLVENSRMVFCAVTRRDLVMLIVMISCYALNCLPEEAFSIFNSMRSDGANGDEFTFSSLLSICDIFEYYDFGKQAHSLILKLSFESDILVASALINMYAKNEDVIDAKRVFDRMAIRNVVAWNTVIVGCGNCGEVIDVMKILRDMLLEGFFPDELTISSVLSSCGYASAITETQQAHALAVKLSFQEFVSVSNSLITAYSKCGNITNAFKCFRLMLEPDLVTYTSLINAYAFHGLGKKATEMFEKMLSCSIKPDRISFLGILSACVHCGFVNAGLHYFKLMTDVYHIIPDSDHYTCLIDLLGRHGFINEAFEFLKSIPIQAESNMFGAFIGSCKLHENIELAKLAAGKLFAIEPEKIVKLCCHG	579

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu02g00152	579	Gene3D	Tetratricopeptide repeat domain	287	393	IPR011990	GO:0005515
	Adu02g00152	579	PANTHER	OS07G0578800 PROTEIN-RELATED	52	574	IPR045215	GO:0003723\|GO:0009451
	Adu02g00152	579	Gene3D	Tetratricopeptide repeat domain	147	286	IPR011990	GO:0005515
	Adu02g00152	579	Gene3D	Tetratricopeptide repeat domain	59	145	IPR011990	GO:0005515
	Adu02g00152	579	Gene3D	Tetratricopeptide repeat domain	405	569	IPR011990	GO:0005515
	Adu02g00152	579	PANTHER	OS07G0259400 PROTEIN	52	574	-	-
	Adu02g00152	579	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	434	468	IPR002885	-
	Adu02g00152	579	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	333	367	IPR002885	-
	Adu02g00152	579	Pfam	PPR repeat family	433	481	IPR002885	-
	Adu02g00152	579	Pfam	PPR repeat family	332	379	IPR002885	-
	Adu02g00152	579	Pfam	PPR repeat	508	531	IPR002885	-
	Adu02g00152	579	Pfam	PPR repeat	100	126	IPR002885	-
	Adu02g00152	579	Pfam	PPR repeat	307	330	IPR002885	-
	Adu02g00152	579	Pfam	PPR repeat	408	432	IPR002885	-
	Adu02g00152	579	Pfam	PPR repeat	238	263	IPR002885	-
	Adu02g00152	579	TIGRFAM	PPR: pentatricopeptide repeat domain	436	469	IPR002885	-
	Adu02g00152	579	TIGRFAM	PPR: pentatricopeptide repeat domain	238	263	IPR002885	-
	Adu02g00152	579	TIGRFAM	PPR: pentatricopeptide repeat domain	335	369	IPR002885	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu02g00152	Adu-Chr2	1706054	1707793	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Adu02g00152	18	571	Glycoside Hydrolase	AT3G49170	30.000	3.31e-81	270

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu02g00152	-		-	ccaj:109802654	822.002