Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0309 CCAACAACCTATTCTCAGTCTGCTTGGTGTCTTAATAAGCTTCAACAAATCATCAAATGGCACCAAACTTATTGCCGACATGTTCTGCCCGTTTATTACGAAATCCAGCCATCTGATGCACGTCTTCAGATGGGTGGTTTTAGAAAAGCCTTCAAAGCAACTGCACACCAAACATTCTCACCACAACAACTGAGGCATGGCATGTCCAGATGGAGCCACGCACTCACCAAAGCTGCAAATTTCTTTGGATGGGATGAGAGCAATTACAGGAGTGATGCTGAACTAGTCGACAAAATTGTTAAGACTGTTCTTCACTTACCAGTCTTGTCTGCTACTAAATTTCCAGTTGGATTACAATTCCAAGTGGAGGATCTGGCAAAACCACCCTTGCCAAA 395 0.4354 PTTYSQSAWCLNKLQQIIKWHQTYCRHVLPVYYEIQPSDARLQMGGFRKAFKATAHQTFSPQQLRHGMSRWSHALTKAANFFGWDESNYRSDAELVDKIVKTVLHLPVLSATKFPVGLQFQVEDLAKPPLP 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0309 131 Pfam TIR domain 3 103 IPR000157 GO:0007165
Pvu10g0309 131 PANTHER TMV RESISTANCE PROTEIN N-LIKE 3 105 - -
Pvu10g0309 131 PANTHER TIR DOMAIN-CONTAINING PROTEIN-RELATED 3 105 - -
Pvu10g0309 131 ProSiteProfiles TIR domain profile. 1 107 IPR000157 GO:0007165
Pvu10g0309 131 Gene3D - 2 110 IPR035897 -
Pvu10g0309 131 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 84 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0309 Pvu-Chr10 4334014 4334491 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0309 4 103 Miscellaneous Gene Families AT4G19920 30.000 2.58e-09 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0309 - - pvu:PHAVU_010G0294000 277.33