Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0640 ATGTCTTCTTCTTCCCCAGATCATAAATGGATTTACGACGTGTTCCTCAACTTCAGAGGAGAAGACACTCGTAAGACTATCGTTTCTCATCTCTACAACGCCCTCACTAACGCTGGAGTCAACACTTTCATCGACGATCACGAGCTTCCCAAGGGAACAGAGCTGCAGCCAGAACTACTTCGAGCAATACGAGGGTCTCAGATTTCTATCGTCGTACTCTCCAAATGCTATGTCCAATCTTCGTGGTGTCTTAACGAGATTGAAGAAATCATGGAATGTCACGAAACCTATGGACAGGTGGTTTTGCCCATATTTTACGATGTTGACTCATCAGATGTGCGTAATCAAGAGGGCGCTTTTGGAAAAGCTTTGAAAGCACttgcacaaaaaaaattctcaggGGCAGGGATGGAATATGTGCTGTCAAGGTGGACGAGTGCCCTCACGCAAGCTGCAAATTTGTGTGGTTGGGATTTAAGGCATTATAGGTAA 492 0.435 MSSSSPDHKWIYDVFLNFRGEDTRKTIVSHLYNALTNAGVNTFIDDHELPKGTELQPELLRAIRGSQISIVVLSKCYVQSSWCLNEIEEIMECHETYGQVVLPIFYDVDSSDVRNQEGAFGKALKALAQKKFSGAGMEYVLSRWTSALTQAANLCGWDLRHYR 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0640 163 Pfam TIR domain 12 150 IPR000157 GO:0007165
Ssu2g0640 163 SMART till_3 11 154 IPR000157 GO:0007165
Ssu2g0640 163 SUPERFAMILY Toll/Interleukin receptor TIR domain 1 157 IPR035897 -
Ssu2g0640 163 ProSiteProfiles TIR domain profile. 10 163 IPR000157 GO:0007165
Ssu2g0640 163 PANTHER TMV RESISTANCE PROTEIN N-LIKE 1 162 - -
Ssu2g0640 163 Gene3D - 6 163 IPR035897 -
Ssu2g0640 163 PANTHER TOLL/INTERLEUKIN-1 RECEPTOR-LIKE PROTEIN 1 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0640 Ssu-Chr2 36360500 36360991 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0640 14 157 Miscellaneous Gene Families AT4G19920 36.111 2.59e-27 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0640 - - cam:101511388 209.149