Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0889 ATGGATAACGCCTTCTCATCATACAAACTCTCAGGGAAGTACGATGTGCTCATCAACTTCACTGGAGAAGACATCCGCAGAAAATTTGTTTCTCATCTCAATTCTGCCTTCTCTACTGTTGGTCTCACCACTTTCCTTCATCACCCCAATGCAGTGAAGTCAACTCACATCCAACAACCTATTCACAGCCACTGTCGTGTAGCAATTGTTGTTTTCACCCAAACCTATTCTCAATCTGCTTGGTGTCTTCATCAGCTTCATCATATCATCAACTGGCACGAAACTTATTGCCGACATGTTCTGCCCGTATATTATGAAATCCAGCCATCTGATGTACGTCTTCAGAAGGGTGACTTTGGAAAAGCTTTCAAGGCAACTGCTCAACAAACATTTTCAGAACAAGAACTTGAGCATGGCATGTCCAGGTGGAGCCATGCACTCACCAAAGCTGCAAATTTCTTTGGATGGGATGAGAGCAATCACAGGAGTGATGCTGAATTAGTGGACAAAATTGTTAAGAGCGTTGTTAATTTACTGGTTTTGTCTGCTACTAAATTTCCAGTAGGATTACAATCCCGCGTGGAAGATCTGATTCGAACTATCAAAAATAAATCCACTGAAGTTTGTATTGTAGAGATATGTGGAGACCAAGGATATGGTAAAACAACTCTTGCCAAAGCGATCTACAATCAAATTCATTGGACATTCAAGAAGAAAAGTTTCATTGAAAATATTTCACAAGTTACCGGAATAAGAGGGTATCTTCGTTTACTGGAACAACTTGTTTTAGATATCCTAAAACAAAAGGTGGAGATTCCTACTATTGATGTGGGAAGAAGAATGATTCGGGAAACACTTTATGGAAAAAGTAAAGGAACGGTAATAATCATTACAACAAGCGATGAAGACCTACGGATGAACCAGCCGATAGATTCTATATTTCGGCTAGAGCGAATGAACGCAGAGGATTCCCTTGAGCTTTTTAGTTGGCACGCATTTAGAGAACCAAAACCAAAGGATGAATACGAAGACCTTGCAAGAAGAGTAATTAGTTATTGTAGAGGAGTAACACTAGCTCTTGAAATCGTTGGAAGTAGTTTATTTGAAAAGACGAAAGAAGAATGGAACAGTTTATTGTTTAAATATCTGATAATTGGCTGGCATCGTGTTCCAGATATTATAAAAGTAAGCATCGAAGAATCAGGAATTTCAAAGCAGCACTTCAGGTGCTCTTTGATTGGTGTTGGAACATACCATCAATTCTTCAATGCTGTCAGCGATAACATATATCAGGTATTGTCAAGCAGTGAGTCTTATGATGTTTGTCTCCCAGCTGTCGATGATCCTTATTGCATGGCCCATATGGGTGAGGGACACTCTGTTTCTTTCGTTGTGCCTGAAGATGGTGATATGAAAGGAATGATTTTGTGTGTTATCTATTTATCAACTCCTAAGATCATTGAACCTCAATTTACTACTGTCGTAATTGTTAATTACACAAAGTGTACATTCCATATACACAATCATGGCACAGCAATTTCCTTTAAAGATGAAGATTGGCATGACATAATGTCAAATTTAGAATGTGGAGACAATGTGGAGATATTTGTGAACTTTGGTAATGGATTGGTGGTCAAGAACACAACGGTGTATCTGATATGGGGTGAAGCAGAGAACATGGAAAAAGTGTCTGAGCCAAAAAAACAGTCTCTCATTAGATTCATAAAGAAAGTTGTAATGTGA 1743 0.3873 MDNAFSSYKLSGKYDVLINFTGEDIRRKFVSHLNSAFSTVGLTTFLHHPNAVKSTHIQQPIHSHCRVAIVVFTQTYSQSAWCLHQLHHIINWHETYCRHVLPVYYEIQPSDVRLQKGDFGKAFKATAQQTFSEQELEHGMSRWSHALTKAANFFGWDESNHRSDAELVDKIVKSVVNLLVLSATKFPVGLQSRVEDLIRTIKNKSTEVCIVEICGDQGYGKTTLAKAIYNQIHWTFKKKSFIENISQVTGIRGYLRLLEQLVLDILKQKVEIPTIDVGRRMIRETLYGKSKGTVIIITTSDEDLRMNQPIDSIFRLERMNAEDSLELFSWHAFREPKPKDEYEDLARRVISYCRGVTLALEIVGSSLFEKTKEEWNSLLFKYLIIGWHRVPDIIKVSIEESGISKQHFRCSLIGVGTYHQFFNAVSDNIYQVLSSSESYDVCLPAVDDPYCMAHMGEGHSVSFVVPEDGDMKGMILCVIYLSTPKIIEPQFTTVVIVNYTKCTFHIHNHGTAISFKDEDWHDIMSNLECGDNVEIFVNFGNGLVVKNTTVYLIWGEAENMEKVSEPKKQSLIRFIKKVVM* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0889 580 PRINTS Disease resistance protein signature 210 225 - -
Vra9g0889 580 PRINTS Disease resistance protein signature 353 367 - -
Vra9g0889 580 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 156 IPR035897 -
Vra9g0889 580 Gene3D - 318 397 IPR042197 -
Vra9g0889 580 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 401 553 - -
Vra9g0889 580 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 17 399 - -
Vra9g0889 580 SMART till_3 13 153 IPR000157 GO:0007165
Vra9g0889 580 Pfam TIR domain 13 180 IPR000157 GO:0007165
Vra9g0889 580 CDD AAA 188 317 - -
Vra9g0889 580 Pfam NB-ARC domain 289 378 IPR002182 GO:0043531
Vra9g0889 580 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 399 IPR044974 GO:0006952
Vra9g0889 580 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 401 553 IPR044974 GO:0006952
Vra9g0889 580 Gene3D - 181 308 IPR027417 -
Vra9g0889 580 Gene3D - 9 180 IPR035897 -
Vra9g0889 580 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 399 IPR027417 -
Vra9g0889 580 ProSiteProfiles TIR domain profile. 12 179 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0889 Vra-Chr9 10578909 10583066 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0889 16 179 Miscellaneous Gene Families AT1G57670 31.325 3.87e-20 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0889 - - vra:111242483 1181.01