Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02514 ATGGGTTCAGGCAAGATCAAGATCGGAATCAACGGATTTGGAAGAATCGGACGTTTGGTTGCTAGAGTTGCTTTGAAGAGGGACGATGTTGAACTTGTTGCTGTTAACGATCCTTTCATCACCACTGATTACATGACATACATGTTTAAGTATGACAGTGTTCACGGACAGTGGAAAAACGATGAACTAACTGTTAAGGACTCTAAAACCCTTCTCTTCGGCTCAAAGCCAGTGACTGTTTTTGCACACAGGAACCCAGAAGAGATCCCATGGGCTAGCACTGGTGCTGATATTATTGTTGAGTCCACCGGTGTTTTTACCGACAAGGACAAGGCCGCTGCTCATTtgaagGGTGGTGCAAAGAAGGTTATCATTTCTGCCCCCAGTAAAGATGCTCCCATGTTTGTTGTTGGTGTTAACGAGAAGGAATACAAGCCAGAGTTTGATATTATCTCCAACGCTAGTTGCACTACCAACTGCCTTGCACCACTTGCAAAGGTTATCAATGACAGATTTGGCATTGTTGAGGGTTTGATGACAACTGTTCATTCCATCACTGCCACTCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAAGAGCTGCCTCATTCAACATTATTCCTAGCAGCACTGGAGCTGCTAAGGCTGTTGGCAAAGTTCTTCCCGCCTTGAATGGAAAGTTGACCGGAATGGCATTCCGTGTCCCAACTGTGGATGTCTCAGTTGTTGACCTTACAGTGAGGCTCGAGAAGGCCGCCACCTATGATCAAATCAAAGCTGCTATCAAGGAGGAGTCTGAGGGCAACTTGAAAGGAATCCTCGGTTACACCGAAGATGATGTGGTCTCCACCGACTTTATTGGTGACACCAGGTCAAGCATCTTTGATGCCAAGGCAGGAATTGCCTTAAATGACAACTTTGTCAAGCTTGTCTCATGGTATGACAACGAGTTGGGTTACAGTACCCGTGTTGTTGACCTCATTGTTCACATTGCAAAGCAACTTTAA 1020 0.4569 MGSGKIKIGINGFGRIGRLVARVALKRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKNDELTVKDSKTLLFGSKPVTVFAHRNPEEIPWASTGADIIVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEKEYKPEFDIISNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKAATYDQIKAAIKEESEGNLKGILGYTEDDVVSTDFIGDTRSSIFDAKAGIALNDNFVKLVSWYDNELGYSTRVVDLIVHIAKQL 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02514 339 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 4 337 - -
Tsu04g02514 339 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 172 IPR036291 -
Tsu04g02514 339 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 161 318 IPR020829 GO:0016620
Tsu04g02514 339 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 154 161 IPR020830 GO:0016620
Tsu04g02514 339 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 4 337 IPR020831 GO:0016620
Tsu04g02514 339 TIGRFAM GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 7 330 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Tsu04g02514 339 PIRSF GAPDH 4 339 IPR020831 GO:0016620
Tsu04g02514 339 SMART gp_dh_n_7 6 156 IPR020828 GO:0051287
Tsu04g02514 339 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 6 109 IPR020828 GO:0051287
Tsu04g02514 339 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 155 318 - -
Tsu04g02514 339 Gene3D - 6 333 - -
Tsu04g02514 339 Gene3D Dihydrodipicolinate Reductase; domain 2 155 320 - -
Tsu04g02514 339 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 177 193 IPR020831 GO:0016620
Tsu04g02514 339 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 234 251 IPR020831 GO:0016620
Tsu04g02514 339 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 274 289 IPR020831 GO:0016620
Tsu04g02514 339 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 115 128 IPR020831 GO:0016620
Tsu04g02514 339 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 150 168 IPR020831 GO:0016620
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02514 Tsu-Chr4 28382920 28386328 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02514 K00134 - gmx:100037457 607.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02514 04 28382920 28386328 Tsu04g02514 04 28382920 28386328 ECH