Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0862 ATGGGCAAGATCAAGATCGGAATCAACGGATTCGGAAGAATCGGACGATTGGTGGCTAGAGTAGCTCTCCAGAGAGACGATGTTGAACTCGTTGCTGTTAACGATCCTTTCATCACCACTGATTATATGACCTACATGTTCAAATATGACAGTGTTCACGGACAGTGGAAAAATCACGAGCTTAAGGTTAAGGACTCTAAGACCCTTCTCTTTGGTGAGAAGTCCGTAGCTGTCTACGGACACAGGAACCCTGAGGAGATCCCATGGGCTGAGAGTGGAGCTGAAATCATTGTAGAGTCCACCGGTGTTTTCACCGATAAGGACAAGGCCGCCGCCCATTTGAAGGGTGGTGCCAAGAAGGTTATTATTTCTGCTCCCAGCAAAGATGCTCCCATGTTTGTTGTTGGTGTTAATGAACATGAATACAAGCCAGAGCTTGACATTATTTCCAATGCTAGCTGCACAACCAATTGCCTTGCTCCTCTCGCCAAGGTTATCAATGACAGATTCGGCATTGTTGAGGGTCTCATGACCACCGTTCATTCCATCACTGCCACCCAGAAAACTGTTGATGGGCCATCCAGCAAAGACTGGAGAGGTGGAAGAGCTGCCTCATTCAACATCATTCCTAGCAGCACTGGCGCTGCTAAGGCTGTTGGGAAAGTCCTTCCTGTTTTGAATGGAAAATTGACCGGAATGGCCTTCCGTGTTCCTACCGTAGATGTCTCTGTTGTTGACCTCACAGTCAGGCTTGAGAAGGCAGCTACCTATGATGAGATTAAGAAAGCTATCAAGGAGGAGTCAGAGGGCAAGTTGAAGGGAATCCTTGGTTACACTGAAGATGACGTGGTCTCCACCGACTTCATTGGTGACAACAGGTCTAGTATTTTTGATGCTAAGGCAGGAATTGCTTTGAATGATAAATACGTGAAGCTTGTGTCGTGGTATGACAACGAGTGGGGCTACAGCACCCGTGTTGTTGATCTGATTGCTCATGTTGCTAAGACTCTTTAA 1014 0.4694 MGKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKNHELKVKDSKTLLFGEKSVAVYGHRNPEEIPWAESGAEIIVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKPELDIISNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPVLNGKLTGMAFRVPTVDVSVVDLTVRLEKAATYDEIKKAIKEESEGKLKGILGYTEDDVVSTDFIGDNRSSIFDAKAGIALNDKYVKLVSWYDNEWGYSTRVVDLIAHVAKTL 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0862 337 SMART gp_dh_n_7 4 154 IPR020828 GO:0051287
Lal17g0862 337 Gene3D Dihydrodipicolinate Reductase; domain 2 153 318 - -
Lal17g0862 337 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 4 107 IPR020828 GO:0051287
Lal17g0862 337 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 152 159 IPR020830 GO:0016620
Lal17g0862 337 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 113 126 IPR020831 GO:0016620
Lal17g0862 337 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 148 166 IPR020831 GO:0016620
Lal17g0862 337 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 175 191 IPR020831 GO:0016620
Lal17g0862 337 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 232 249 IPR020831 GO:0016620
Lal17g0862 337 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 272 287 IPR020831 GO:0016620
Lal17g0862 337 TIGRFAM GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 5 328 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Lal17g0862 337 PIRSF GAPDH 2 337 IPR020831 GO:0016620
Lal17g0862 337 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 170 IPR036291 -
Lal17g0862 337 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 159 316 IPR020829 GO:0016620
Lal17g0862 337 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 3 336 - -
Lal17g0862 337 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 153 316 - -
Lal17g0862 337 Gene3D - 4 331 - -
Lal17g0862 337 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 3 336 IPR020831 GO:0016620
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0862 Lal-Chr17 6569985 6573048 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0862 K00134 - jre:109021727 622.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0862 17 6569985 6573048 Lal17g0862 17 6569985 6573048 ECH
Lal17g0862 17 6569985 6573048 Lal4g0742 4 6164135 6167377 LSH