Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00351 ATGGGCAAGGTCAAGATCGGAATCAACGGATTCGGAAGAATTGGGCGTTTGGTTGCCAGGGTTGCTCTTCAGAGAGACGATGTCGAACTCGTTGCTGTTAACGATCCTTTCATTACCACCGATTACATGACATACATGTTTAAATACGACAGTGTTCACGGACACTGGAAGCATCACGAAGTTTCCGTCAAGGACTCTAAGACCCTTCTCTTTGGTGACAAGCCAGTCACTGTTTTTGGCCACAGGAACCCTGAAGAGATCCCATGGGCCGAGACTGGAGCTGAAATCATTGTTGAGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAGGGTGGTGCAAAGAAGGTTATCATTTCTGCCCCCAGCAAGGATGCTCCCATGTTTGTTGTTGGTGTTAACGAACATGAGTACAAGCCAGAGCTTGATATCATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCTCCACTTGCCAAGGTCATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATTTTTAtataa 558 0.4677 MGKVKIGINGFGRIGRLVARVALQRDDVELVAVNDPFITTDYMTYMFKYDSVHGHWKHHEVSVKDSKTLLFGDKPVTVFGHRNPEEIPWAETGAEIIVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKPELDIISNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSIFI 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00351 185 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 3 183 - -
Cca03g00351 185 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 4 107 IPR020828 GO:0051287
Cca03g00351 185 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 113 126 IPR020831 GO:0016620
Cca03g00351 185 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 148 166 IPR020831 GO:0016620
Cca03g00351 185 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 175 185 IPR020831 GO:0016620
Cca03g00351 185 SMART gp_dh_n_7 4 154 IPR020828 GO:0051287
Cca03g00351 185 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 152 159 IPR020830 GO:0016620
Cca03g00351 185 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 3 183 IPR020831 GO:0016620
Cca03g00351 185 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 159 183 IPR020829 GO:0016620
Cca03g00351 185 Gene3D - 4 152 - -
Cca03g00351 185 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 174 IPR036291 -
Cca03g00351 185 Gene3D Dihydrodipicolinate Reductase; domain 2 153 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00351 Cca-Chr3 5417124 5418482 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00351 K00134 - gmx:100781161 355.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00351 03 5417124 5418482 Cca03g00351 03 5417124 5418482 ECH