Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01997 ATGGGCAAGGTCAAGATCGGAATCAACGGATTTGGAAGAATTGGGCGTTTGGTGGCCAGGGTGGCTCTTCAGAGAGACGATGTGGAACTCGTTGCCGTTAACGATCCCTTCATCACCACCGATTACATGACATACATGTTTAAATACGACAGTGTTCACGGACACTGGAAGCATCACGAAGTCACCGTTAAGGACTCCAAGACCCTTCTCTTTGGTGAGAAGGCAGTCACTGTTTTTGGACACAGGAACCCTGACGAGATCCCATGGGGTGAGACCGGAGCTGATATCATTGTTGAGTCCACCGGTGTTTTCACCGATAAGGACAAGGCCGCCGCACACTTGAAGGGTGGCGCTAAGAAGGTTATTATTTCTGCACCCAGTAAGGATGCTCCCATGTTTGTTGTTGGTGTTAACGAGCACGAGTACAAGCCAGAGCTTGATATCATCTCCAATGCCAGCTGCACAACCAACTGCCTTGCTCCACTCGCCAAGGTTATTAATGACAGATTTGGCATTGTTGAGGGTTTGATGACCACAGTTCATTCCATCACTGCTACCCAGAAGACTGTTGATGGACCATCGGCCAAAGACTGGAGAGGTGGAAGAGCTGCTTCATTTAACATCATTCCTAGCAGCACTGGAGCTGCCAAGGCTGTTGGGAAAGTCCTTCCTTCTTTGAATGGAAAATTGACTGGAATGGCATTCCGAGTTCCCACTGTGGATGTCTCTGTTGTTGACCTCACAGTGAGGCTGCAGAAGAGTGCCACCTATGAGGAAATTAAAAAGGCTATCAAGGAGGAATCAGAGGGCAAGTTGAAGGGAATCCTTGGTTACACTGAAGATGATGTGGTCTCCACCGATTTTGTGGGTGACAGCAGATCAAGTATCTTTGATGCAAAGGCTGGAATAGCATTGAACGAAAATTTTGTGAAGCTGGTCTCGTGGTATGACAATGAGTGGGGATACAGCTCACGTGTGATTGATCTGCTTGTTCATGTTGCCAAGAAGTCTCTTTAA 1017 0.4769 MGKVKIGINGFGRIGRLVARVALQRDDVELVAVNDPFITTDYMTYMFKYDSVHGHWKHHEVTVKDSKTLLFGEKAVTVFGHRNPDEIPWGETGADIIVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKPELDIISNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMAFRVPTVDVSVVDLTVRLQKSATYEEIKKAIKEESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALNENFVKLVSWYDNEWGYSSRVIDLLVHVAKKSL 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01997 338 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 4 107 IPR020828 GO:0051287
Phco7g01997 338 SMART gp_dh_n_7 4 154 IPR020828 GO:0051287
Phco7g01997 338 NCBIfam glyceraldehyde-3-phosphate dehydrogenase, type I 5 328 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Phco7g01997 338 Gene3D Dihydrodipicolinate Reductase; domain 2 153 318 - -
Phco7g01997 338 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 152 159 IPR020830 GO:0016620
Phco7g01997 338 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 159 316 IPR020829 GO:0016620
Phco7g01997 338 PIRSF GAPDH 2 337 IPR020831 GO:0016620
Phco7g01997 338 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 3 335 IPR020831 GO:0016620
Phco7g01997 338 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 175 191 IPR020831 GO:0016620
Phco7g01997 338 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 272 287 IPR020831 GO:0016620
Phco7g01997 338 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 113 126 IPR020831 GO:0016620
Phco7g01997 338 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 232 249 IPR020831 GO:0016620
Phco7g01997 338 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 148 166 IPR020831 GO:0016620
Phco7g01997 338 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 170 IPR036291 -
Phco7g01997 338 FunFam Glyceraldehyde-3-phosphate dehydrogenase 153 318 - -
Phco7g01997 338 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 153 316 - -
Phco7g01997 338 FunFam Glyceraldehyde-3-phosphate dehydrogenase 4 164 - -
Phco7g01997 338 Gene3D - 4 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01997 Phco-Chr7 34040468 34042953 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02952 2 58428657 58430904 Phco7g01997 7 34040468 34042953 ECH
Phco7g01997 7 34040468 34042953 Phco7g01997 7 34040468 34042953 ECH