Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g1032 ATGGGTCAATCTCCTCCTCATAGCCCTAGGGCTACCCAGTCACCCCTGATGTTCACTCCTCATATTCCATTCATTTCGCTACAAAAACCTGATGAGATGCTTGTCATAAACCATTCGTTGATGCAAGCTTCTTCAGGATATGAAGACATGTGCAACGAGCAAGGATTCCCGACTGCGTTTACATGGACCTATAGTGACAAGGAAATAGCTTTGGAGGGATCATGGGATAATTGGAATACAAGAAAACCCTTGCAGAGGTTAGGGGAAAAGTTCACCATTATGAGAGTGCCCCTCTCGGGTGTCTATCAGTATAGATTTATTGTTGATGGACAATGGAGGATTCTGTCCCTGAAGACTTGA 360 0.4444 MGQSPPHSPRATQSPLMFTPHIPFISLQKPDEMLVINHSLMQASSGYEDMCNEQGFPTAFTWTYSDKEIALEGSWDNWNTRKPLQRLGEKFTIMRVPLSGVYQYRFIVDGQWRILSLKT* 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g1032 119 CDD E_set_AMPKbeta_like_N 57 113 - -
Vvi17g1032 119 Pfam Glycogen recognition site of AMP-activated protein kinase 57 114 IPR032640 -
Vvi17g1032 119 Gene3D Immunoglobulins 49 118 IPR013783 -
Vvi17g1032 119 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1 2 114 IPR043554 -
Vvi17g1032 119 SUPERFAMILY E set domains 55 114 IPR014756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g1032 Vvi-Chr17 13003386 13003745 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g1032 K07199 - vvi:109124313 253.447