Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01874 ATGGGCAAGGTCAAGATCGGAATCAACGGATTTGGAAGAATTGGCCGTTTGGTTGCCAGAGTCGCTCTGCAAAGAGACGATGTGGAGCTCGTTGCCGTTAACGACCCTTTCATTACCACCGATTACATGACATACATGTTTAAATACGACAGTGTTCACGGACACTGGAAGCATCACGATGTCACCGTTAAGGACGAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAGGAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGATATCATTGTTGAGTCCACCGGAGTTTTCACCGATAAGGACAAGGCCGCCGCACATTTGAAGGGTGGTGCGAAGAaggttattatttctgcccccagtaaggatgcccccatgtttgttgttggtgttaacgagcacgagtacaagccagagcttgatattatttccaatgctagctgcacaaccaactgccttgctccacttgctaagGTTATTAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTGCCACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAAGAGCTGCTTCATTTAACATCATTCCTAGCAGCACTGGAGCTGCCAAGGCTGTTGGAAAAGTCCTTCCTGCTTTGAACGGAAAATTGACTGGTATGGCATTCCGTGTTCCCACCGTGGATGTCTCTGTTGTTGACCTCACAGTGAGGCTGGAGAAGGAAGCCTCCTACGATGAAATTAAAAATGCTATCAAGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAGCTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAA 1017 0.41 MGKVKIGINGFGRIGRLVARVALQRDDVELVAVNDPFITTDYMTYMFKYDSVHGHWKHHDVTVKDEKTLLFGDKPVTVFGHRNPEEIPWGSTGADIIVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKPELDIISNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKEASYDEIKNAIKEESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALNKNFVKLVSWYDNEWGYSSRVIDLLVFVAKKSF 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01874 338 SMART gp_dh_n_7 4 154 IPR020828 GO:0051287
Gma04g01874 338 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 3 335 - -
Gma04g01874 338 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 152 159 IPR020830 GO:0016620
Gma04g01874 338 TIGRFAM GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 5 328 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Gma04g01874 338 PIRSF GAPDH 2 337 IPR020831 GO:0016620
Gma04g01874 338 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 159 316 IPR020829 GO:0016620
Gma04g01874 338 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 113 126 IPR020831 GO:0016620
Gma04g01874 338 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 148 166 IPR020831 GO:0016620
Gma04g01874 338 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 175 191 IPR020831 GO:0016620
Gma04g01874 338 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 232 249 IPR020831 GO:0016620
Gma04g01874 338 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 272 287 IPR020831 GO:0016620
Gma04g01874 338 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 3 335 IPR020831 GO:0016620
Gma04g01874 338 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 4 107 IPR020828 GO:0051287
Gma04g01874 338 Gene3D Dihydrodipicolinate Reductase; domain 2 153 318 - -
Gma04g01874 338 Gene3D - 4 330 - -
Gma04g01874 338 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 153 316 - -
Gma04g01874 338 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 170 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01874 Gma-Chr4 48967243 48970054 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01874 K00134 - gmx:100781161 666.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01537 06 14821820 14824297 Gma04g01874 04 48967243 48970054 ECH
Gma18g00090 18 711142 714001 Gma04g01874 04 48967243 48970054 ECH
Gma04g01874 04 48967243 48970054 Gma04g01874 04 48967243 48970054 ECH
Gma04g01874 04 48967243 48970054 Gma06g01537 06 14821820 14824297 GST