Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01965 ATGAATTTCATGGATCAGGCAAGGTCAAGATCGGAATCAACGGTATACCATCTTCATCCTCTGTTCTCCCTTCTCTTCCTTCAGATCAGTTCAAAACTTTTTCAACTGTTTCATTTTCCTTTTTCTTTATTATATTTATTTATTTTAAATGTAAAAGGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTCGCTCTTCAGAGAGACGATGTGGAACTCGTTGCTGTTAACGATCCCTTCATCACCACCGATTACATGACATACATGTTTAAATACGACAGTGTTCACGGACACTGGAAGCATCACGATGTCACCGTGAAGGACTCCAATACCCTTCTCTTTGGTGAGAAGCCAGTCACTGTTTTTGGACACAGGAATCCTGAAGAGATCCCATGGGGTTCGACCGGAGCTGATATCATTGTTGAGTCCACCGGAGTTTTCACCGATAAGGACAAGGCCGCCGCTCATTTGAAGGGTGGTGCTAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCTCCCATGTTTGTTGTTGGTGTTAACGAGCACGAGTACAAGCCAGAGCTTGATATCATTTCCAATGCCAGCTGCACAACCAACTGCCTTGCTCCCCTCGCCAAGGTTATTAATGACAGATTTGGCATTGTTGAGGGTTTGATGACCACAGTTCATTCCATCACTGCTACCCAGAAGACTGTTGATGGACCATCAGCCAAAGACTGGAGAGGTGGAAGAGCTGCTTCATTTAACATCATTCCTAGCAGCACTGGAGCTGCCAAGGCTGTTGGGAAAGTCCTTCCTTCTTTGAATGGAAAATTGACTGGAATGGCATTCCGTGTCCCCACCGTGGATGTGTCCGTTGTTGACCTCACAGTGAGGCTGGAGAAGAGTGCCAGCTATGATGAAATTAAAGATGCTATCAAGGAGGAATCCGAGGGCAAGTTGAAGGGAATTCTTGGTTACACCGAAGATGATGTGGTCTCCACCGACTTTGTGGGTGACAGCAGATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAACAAAAATTTTGTGAAACTCGTCTCGTGGTACGACAATGAGTGGGGATACAGCTCACGTGTGATTGACCTGCTTGTTCACGTTGCCAAGAACTCTCTTTAA 1146 0.4538 MNFMDQARSRSESTVYHLHPLFSLLFLQISSKLFQLFHFPFSLLYLFILNVKGFGRIGRLVARVALQRDDVELVAVNDPFITTDYMTYMFKYDSVHGHWKHHDVTVKDSNTLLFGEKPVTVFGHRNPEEIPWGSTGADIIVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKPELDIISNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMAFRVPTVDVSVVDLTVRLEKSASYDEIKDAIKEESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALNKNFVKLVSWYDNEWGYSSRVIDLLVHVAKNSL 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01965 381 FunFam Glyceraldehyde-3-phosphate dehydrogenase 48 207 - -
Vimu10g01965 381 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 202 359 IPR020829 GO:0016620
Vimu10g01965 381 FunFam Glyceraldehyde-3-phosphate dehydrogenase 196 361 - -
Vimu10g01965 381 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 50 150 IPR020828 GO:0051287
Vimu10g01965 381 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 50 378 IPR020831 GO:0016620
Vimu10g01965 381 NCBIfam glyceraldehyde-3-phosphate dehydrogenase, type I 50 371 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Vimu10g01965 381 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 50 213 IPR036291 -
Vimu10g01965 381 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 196 359 - -
Vimu10g01965 381 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 195 202 IPR020830 GO:0016620
Vimu10g01965 381 PIRSF GAPDH 48 380 IPR020831 GO:0016620
Vimu10g01965 381 Gene3D Dihydrodipicolinate Reductase; domain 2 196 361 - -
Vimu10g01965 381 SMART gp_dh_n_7 51 197 IPR020828 GO:0051287
Vimu10g01965 381 Gene3D - 51 373 - -
Vimu10g01965 381 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 315 330 IPR020831 GO:0016620
Vimu10g01965 381 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 191 209 IPR020831 GO:0016620
Vimu10g01965 381 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 275 292 IPR020831 GO:0016620
Vimu10g01965 381 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 156 169 IPR020831 GO:0016620
Vimu10g01965 381 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 218 234 IPR020831 GO:0016620
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01965 Vimu-Chr10 28578674 28581048 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01965 K00134 - gmx:100037457 634.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01542 6 14447237 14449096 Vimu10g01965 10 28578674 28581048 ECH
Vimu10g01965 10 28578674 28581048 Vimu10g01965 10 28578674 28581048 ECH