Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02890 ATGACCTACATGTTTAAGTATGACAGTGTTCACGGACACTGGAAACACACCGATGTGTCGGTTAAGGACTCTAAGACCCTTCTCTTTGGTGAGAAGCCAGTCACTGTCTTTGGACACAGGAACCCTGATGAGATCCCTTGGGCTGAGACTGGTGCTGAAATCATTGTCGAGTCCACCGGAGTCTTCACAGATAAGGAAAAGGCTGCTGCCCATTTGAAGGGTGGTGCAAAGAAGGTTATTATTTCGGCCCCCAGTAAAGATGCTCCAATGTTTGTTGTTGGTGTCAATGAGCACGAATACAAGCCAGAGCTTAATGTTATTTCTAATGCTAGTTGCACAACCAACTGCCTTGCTCCACTTGCAAAGGTCATTAATGACAAGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATTACCGCCACCCAGAAAACTGTTGATGGGCCATCCAGCAAGGACTGGAGAGGTGGAAGAGCTGCTTCATTCAACATTATTCCTAGCAGTACTGGAGCTGCTAAGGCTGTTGGGAAAGTCCTTCCTGCTTTGAATGGAAAGTTGACTGGAATGGCATTCCGTGTTCCTACTGTGGATGTCTCTGTTGTTGACCTCACAGTGAGGCTGGAGAAGCCAGCCACCTATGAGCAAGTTAAAAATGCTATCAAGTAA 672 0.4643 MTYMFKYDSVHGHWKHTDVSVKDSKTLLFGEKPVTVFGHRNPDEIPWAETGAEIIVESTGVFTDKEKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKPELNVISNASCTTNCLAPLAKVINDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKPATYEQVKNAIK. 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02890 223 FunFam Glyceraldehyde-3-phosphate dehydrogenase 1 128 - -
Seca4g02890 223 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 111 223 - -
Seca4g02890 223 FunFam Glyceraldehyde-3-phosphate dehydrogenase 111 223 - -
Seca4g02890 223 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 71 84 IPR020831 GO:0016620
Seca4g02890 223 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 133 149 IPR020831 GO:0016620
Seca4g02890 223 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 106 124 IPR020831 GO:0016620
Seca4g02890 223 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 190 207 IPR020831 GO:0016620
Seca4g02890 223 SMART gp_dh_n_7 1 112 IPR020828 GO:0051287
Seca4g02890 223 Gene3D Dihydrodipicolinate Reductase; domain 2 111 223 - -
Seca4g02890 223 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 110 117 IPR020830 GO:0016620
Seca4g02890 223 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 1 223 IPR020831 GO:0016620
Seca4g02890 223 Gene3D - 1 110 - -
Seca4g02890 223 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1 128 IPR036291 -
Seca4g02890 223 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 1 65 IPR020828 GO:0051287
Seca4g02890 223 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 117 223 IPR020829 GO:0016620
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02890 Seca-Chr4 49841218 49844404 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02890 K00134 - gmx:100781161 417.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g05061 10 116236983 116239263 Seca4g02890 4 49841218 49844404 ECH
Seca6g01745 6 72284572 72287106 Seca4g02890 4 49841218 49844404 ECH
Seca4g02890 4 49841218 49844404 Seca4g02890 4 49841218 49844404 ECH