Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1292 ATGCGCAGCATCATAGGCAAGATTAAGATCGGAATCAATGGATTTGGAAGGATTGGTCGCTTGGTGGCTAGAGTGGCCCTGCAGAGAGATGATATTGAACTTGTAGCTGTTAATGACCCTTTCATTGATACCAATTACATGGTCTACATGTTCAAGTACGATAGTGTTCACGGACAGTGGAAACATCACGATGTCAAAGTCAAGGACTCTAAGACCCTTCTTTTTGATGAGAAGCCAGTCACAGTCTTTGCACAAAGGAACCCAGAGGAGATCGCTTGGGCTGAGACTGGAGCTGAGTATATTGTTGAGTCTACCGGTGTTTTCACAGACAAGGAAAAGGCTGCTGCCCATTTGAAGGGTGGTGCTAAGAAGGTTGTCATCTCGGCCCCCAGCAAAGATGCTCCCATGTTTGTTGTAGGTGTTAATGAGAAGGAATACAAGCCGGAGTACAATGTTATTTCTAATGCTAGCTGCACAACTAACTGCCTCGCTCCACTTGCTAAGGTTATCCATGACAGGTTTGGCATTGTTGAGGGCTTAATGACCACTGTTCATTCCATCACTGCCACTCAGAAGACTGTTGATGGACCATCAAGTAAAGACTGGAGAGGTGGAAGAGCTGCCTCCTTTAACATCATTCCAAGCAGCACAGGAGCTGCTAAGGCTGTTGGGAAAGTGCTTCCTGATTTGAATGGGAAATTGACTGGTATGGCATTCCGTGTTCCTACTGTGGATGTCTCTGTCGTTGACCTCACAGTGAAGCTTGCAAAGAAAGCTTCCTATGACCAAATTAAAGCTGCTATCAAGGAGGAGTCTGAGGGCAAGCTGAAGGGAATCCTTGGTTACACTGAAGATGATGTGGTCTCCTCGGACTTTGTTGGTGATACCAGGTCAAGCATTTTTGATGCTAAGGCTGGAATTGCTTTGACTGAGGACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGATGGGTTACAGCAATCGCGTTGTTGATCTGATTTCTCACATTGCCAATGTTTAA 1023 0.4555 MRSIIGKIKIGINGFGRIGRLVARVALQRDDIELVAVNDPFIDTNYMVYMFKYDSVHGQWKHHDVKVKDSKTLLFDEKPVTVFAQRNPEEIAWAETGAEYIVESTGVFTDKEKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPEYNVISNASCTTNCLAPLAKVIHDRFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMAFRVPTVDVSVVDLTVKLAKKASYDQIKAAIKEESEGKLKGILGYTEDDVVSSDFVGDTRSSIFDAKAGIALTEDFVKLVSWYDNEMGYSNRVVDLISHIANV 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1292 340 PIRSF GAPDH 6 340 IPR020831 GO:0016620
Sto3g1292 340 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 178 IPR036291 -
Sto3g1292 340 TIGRFAM GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 9 332 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Sto3g1292 340 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 157 320 - -
Sto3g1292 340 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 6 340 IPR020831 GO:0016620
Sto3g1292 340 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 156 163 IPR020830 GO:0016620
Sto3g1292 340 Gene3D - 8 335 - -
Sto3g1292 340 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 163 320 IPR020829 GO:0016620
Sto3g1292 340 SMART gp_dh_n_7 8 158 IPR020828 GO:0051287
Sto3g1292 340 Gene3D Dihydrodipicolinate Reductase; domain 2 157 322 - -
Sto3g1292 340 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 6 340 - -
Sto3g1292 340 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 117 130 IPR020831 GO:0016620
Sto3g1292 340 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 152 170 IPR020831 GO:0016620
Sto3g1292 340 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 179 195 IPR020831 GO:0016620
Sto3g1292 340 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 236 253 IPR020831 GO:0016620
Sto3g1292 340 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 276 291 IPR020831 GO:0016620
Sto3g1292 340 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 8 111 IPR020828 GO:0051287
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1292 Sto-Chr3 9342771 9346734 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1292 K00134 - ming:122077035 585.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1743 8 11103916 11105793 Sto3g1292 3 9342771 9346734 ECH
Sto3g2912 3 33800349 33804026 Sto3g1292 3 9342771 9346734 ECH
Sto3g1292 3 9342771 9346734 Sto3g1292 3 9342771 9346734 ECH