Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g1027 ATGGGGAAGATCAAGATCGGAATTAATGGATTTGGAAGGATCGGCCGATTGGTGGCCAGAGTGGCACTGCAGAGAGACGATGTTGAGTTGGTTGCAGTCAACGATCCATTCATCACCACTGATTACATGACCTACATGTTTAAGTACGACAGTGTTCACGGTCAGTGGAAGCATCATGAACTCAAGGTCAAGGACTCTAACACCCTTCTCTTTGGTGAGAAGCCAGTCACCGTCTTTGGTATTAGGAACCCAGAGGAGATTCCATGGGGTGAGACCGGAGCTGAATTTGTTGTTGAGTCAACTGGTGTGTTCACTGACAAGGACAAGGCTGCTGCCCATTTGAAGGGTGGTGCTAAGAAGGTTGTCATCTCAGCCCCAAGCAAAGATGCTCCTATGTTCGTTGTTGGAGTTAACGAGAAGGAATACAAGCCAGAACTCCACATTGTTTCCAATGCTAGTTGCACTACAAACTGCCTTGCTCCTCTTGCGAAGGTTATTAATGACCGATTTGGCATTGTGGAGGGTCTTATGACAACTGTTCACTCGATTACTGCCACCCAAAAGACTGTTGATGGCCCTTCAATGAAGGACTGGAGAGGTGGAAGAGCTGCTTCATTCAACATCATTCCTAGCAGCACTGGAGCTGCCAAGGCTGTTGGCAAAGTGTTGCCTTCATTGAATGGGAAATTGACTGGAATGGCTTTCCGTGTTCCTACTGTTGATGTGTCGGTGGTTGACCTCACTGTCAGGCTGGAGAAGGCTGCTACCTATGAGCAAGTTAAAGCTGCCATCAAGGAGGAGTCAGAGGGAAAAATGAAGGGAATCTTGGGTTACACTGAAGATGATGTTGTTTCCACAGACTTCATCGGTGACAACAGGTCCAGCATCTTTGATGCCAAGGCTGGAATAGCACTCAACGAGAAGTTCTTGAAGATTGTCGCTTGGTATGACAATGAATGGGGTTACAGCTCCCGTGTGATCGACTTGATTGTCCACATGGCATCCTGCAAATAA 1014 0.4734 MGKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDSNTLLFGEKPVTVFGIRNPEEIPWGETGAEFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELHIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMAFRVPTVDVSVVDLTVRLEKAATYEQVKAAIKEESEGKMKGILGYTEDDVVSTDFIGDNRSSIFDAKAGIALNEKFLKIVAWYDNEWGYSSRVIDLIVHMASCK* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g1027 337 PIRSF GAPDH 2 337 IPR020831 GO:0016620
Vvi17g1027 337 Gene3D - 4 331 - -
Vvi17g1027 337 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 153 316 - -
Vvi17g1027 337 NCBIfam glyceraldehyde-3-phosphate dehydrogenase, type I 5 328 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Vvi17g1027 337 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 175 191 IPR020831 GO:0016620
Vvi17g1027 337 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 148 166 IPR020831 GO:0016620
Vvi17g1027 337 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 113 126 IPR020831 GO:0016620
Vvi17g1027 337 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 272 287 IPR020831 GO:0016620
Vvi17g1027 337 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 232 249 IPR020831 GO:0016620
Vvi17g1027 337 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 159 316 IPR020829 GO:0016620
Vvi17g1027 337 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 152 159 IPR020830 GO:0016620
Vvi17g1027 337 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 3 335 IPR020831 GO:0016620
Vvi17g1027 337 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 170 IPR036291 -
Vvi17g1027 337 FunFam Glyceraldehyde-3-phosphate dehydrogenase 153 318 - -
Vvi17g1027 337 Gene3D Dihydrodipicolinate Reductase; domain 2 153 318 - -
Vvi17g1027 337 FunFam Glyceraldehyde-3-phosphate dehydrogenase 4 164 - -
Vvi17g1027 337 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 4 107 IPR020828 GO:0051287
Vvi17g1027 337 SMART gp_dh_n_7 4 154 IPR020828 GO:0051287
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g1027 Vvi-Chr17 12807152 12811693 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g1027 K00134 - vvi:100233024 660.603