Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00773 ATGGGAAAGGTCAAGATCGGAATCAACGGATTTGGAAGAATTGGCCGTTTGGTTGCTAGAGTTGCTTTGCAGAGAGACGATGTTGAACTCGTTGCCGTTAACGATCCTTTCATTTCCACTGATTACATGACCTATATGTTTAAGTATGACAGTGTTCATGGACACTGGAAACATCACGATGTGACCGTGAAGGACTCTAAGACCCTTCTCTTTGGTGACAAGCCTGTCACTGTTTTTGGACACAGGAACCCAGATGAGATCCCTTGGGCTGAGACTGGAGCCGAAGTCGTTGTTGAGTCCACTGGAGTTTTCACTGATAAAGACAAGGCTGCTGCACATTTGAAGGGTGGTGCAAAGAAGGTTATTATTTCAGCCCCCAGTAAAGATGCTCCCATGTTTGTTGTTGGTGTGAACGAGCACGAATACAAGCCAGAGCTTGATGTTATTTCTAATGCTAGCTGCACAACCAACTGCCTTGCTCCACTTGCAAAGGTTATTAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTGCCACCCAGAAAACTGTTGATGGGCCATCCGCCAAGGACTGGAGAGGTGGAAGAGCTGCTTCATTTAACATCATTCCTAGCAGTACTGGAGCTGCTAAGGCTGTTGGGAAAGTCCTTCCTGCTTTGAATGGAAAGTTGACTGGAATGGCATTCCGTGTTCCTACTGTGGATGTCTCTGTCGTTGACCTCACAGTGAGGCTGGAAAAGGAAGCCACCTATGAGCAAATAAAGAATGCTATCAAGGAGGAGTCAGAGGGTAAGTTGAAGGGAATTCTTGGCTACACTGAAGATGATGTGGTTTCCACCGACTTTGTTGGTGATAGCAGGTCAAGTATTTTTGATGCTAAGGCAGGAATTGCTTTGAATAAGAACTTTGTTAAGTTGGTCTCCTGGTACGACAACGAGTGGGGTTACAGTACACGTGTGGTTGACCTGATTGTTCACGTCGCCAACAAGTCTCATTAG 1017 0.4582 MGKVKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGHWKHHDVTVKDSKTLLFGDKPVTVFGHRNPDEIPWAETGAEVVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKPELDVISNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKEATYEQIKNAIKEESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALNKNFVKLVSWYDNEWGYSTRVVDLIVHVANKSH* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00773 338 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 159 316 IPR020829 GO:0016620
Rops10g00773 338 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 175 191 IPR020831 GO:0016620
Rops10g00773 338 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 148 166 IPR020831 GO:0016620
Rops10g00773 338 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 272 287 IPR020831 GO:0016620
Rops10g00773 338 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 113 126 IPR020831 GO:0016620
Rops10g00773 338 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 232 249 IPR020831 GO:0016620
Rops10g00773 338 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 152 159 IPR020830 GO:0016620
Rops10g00773 338 Gene3D - 4 331 - -
Rops10g00773 338 FunFam Glyceraldehyde-3-phosphate dehydrogenase 4 164 - -
Rops10g00773 338 NCBIfam glyceraldehyde-3-phosphate dehydrogenase, type I 5 328 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Rops10g00773 338 Gene3D Dihydrodipicolinate Reductase; domain 2 153 318 - -
Rops10g00773 338 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 153 316 - -
Rops10g00773 338 PIRSF GAPDH 2 338 IPR020831 GO:0016620
Rops10g00773 338 FunFam Glyceraldehyde-3-phosphate dehydrogenase 153 318 - -
Rops10g00773 338 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 170 IPR036291 -
Rops10g00773 338 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 3 335 IPR020831 GO:0016620
Rops10g00773 338 SMART gp_dh_n_7 4 154 IPR020828 GO:0051287
Rops10g00773 338 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 4 107 IPR020828 GO:0051287
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00773 Rops-Chr10 18207294 18215546 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00773 K00134 - gmx:100781161 642.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02439 8 56210037 56213002 Rops10g00773 10 18207294 18215546 ECH
Rops11g03749 11 71177650 71180780 Rops10g00773 10 18207294 18215546 ECH
Rops10g00773 10 18207294 18215546 Rops10g00773 10 18207294 18215546 ECH