Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00277 ATGGGCAAGGTCAAGATCGGAATCAATGGATTTGGAAGAATTGGTCGCTTGGTGGCCAGAGTGGCTCTCCAAAGAGAAGATGTAGAACTCGTCGCTGTTAACGACCCCTTTATCACCACCGACTACATGACCTACATGTTTAAGTACGACAGTGTTCACGGACAGTGGAAGCATCACGATATCAAGGTCAAAGACTCTAAGACCCTTCTTTTCGGTGAGACCCCAGTAACCGTGTTTGGGATCAGAAACCCAGAGGAGATTCCTTGGGCAGAGACTGGAGCTGAATACATTGTTGAGTCCACCGGAGTCTTCACAGATAAGGAGAAGGCTGCTGCCCATTTGAAGGGTGGTGCAAAGAAGGTTATCATCTCAGCCCCAAGTAAAGATGCTCCTATGTTTGTAGTAGGTGTTAACGAGAAAGAGTACAAGCCGGAATTCAATGTTATTTCTAATGCTAGCTGCACAACAAACTGCCTTGCCCCCCTTGCAAAGGTCATTCATGACAGATTTGGCATTGTTGAGGGGCTAATGACTACTGTTCATTCTATCACTGCCACCCAGAAGACTGTCGACGGGCCATCCAGCAAGGACTGGAGAGGTGGAAGAGCTGCTTCATTTAACATCATTCCTAGCAGTACTGGAGCTGCCAAGGCTGTTGGAAAAGTGCTTCCTGCTTTAAATGGGAAATTGACTGGAATGTCCTTCCGTGTTCCTACTGTGGATGTATCTGTTGTTGATCTCACTGTTAGGCTGGAAAAGCCAGCCAGTTATGAGCAAGTCAAGGCTGCCTTTAAggAGGAGTCCGAGGGGAAGTTGAAGGGAATCCTTGGTTACACTGAGGATGATGTTGTCTCTACTGACTTTGTTGGTGATAGCAGGTCAAGTATTTTTGATGCTAAGGCAGGAATTGCTTTAAACGACAACTTTATAAAGATCGTAGCATGGTACGACAACGAGTGGGGCTACAGCACACGTGTGGTTGACCTGATTGCTCACGTTGCTAAAACTCATTA 1013 0.464 MGKVKIGINGFGRIGRLVARVALQREDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHDIKVKDSKTLLFGETPVTVFGIRNPEEIPWAETGAEYIVESTGVFTDKEKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEKEYKPEFNVISNASCTTNCLAPLAKVIHDRFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKPASYEQVKAAFKEESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALNDNFIKIVAWYDNEWGYSTRVVDLIAHVAKTH 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00277 337 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 3 336 - -
Bva05g00277 337 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 174 IPR036291 -
Bva05g00277 337 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 159 316 IPR020829 GO:0016620
Bva05g00277 337 SMART gp_dh_n_7 4 154 IPR020828 GO:0051287
Bva05g00277 337 Gene3D Dihydrodipicolinate Reductase; domain 2 153 318 - -
Bva05g00277 337 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 4 107 IPR020828 GO:0051287
Bva05g00277 337 TIGRFAM GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 5 328 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Bva05g00277 337 PIRSF GAPDH 2 337 IPR020831 GO:0016620
Bva05g00277 337 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 148 166 IPR020831 GO:0016620
Bva05g00277 337 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 175 191 IPR020831 GO:0016620
Bva05g00277 337 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 113 126 IPR020831 GO:0016620
Bva05g00277 337 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 272 287 IPR020831 GO:0016620
Bva05g00277 337 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 232 249 IPR020831 GO:0016620
Bva05g00277 337 Gene3D - 4 331 - -
Bva05g00277 337 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 152 159 IPR020830 GO:0016620
Bva05g00277 337 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 3 336 IPR020831 GO:0016620
Bva05g00277 337 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 153 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00277 Bva-Chr5 1355049 1359092 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00277 K00134 - cit:102624117 623.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01472 06 10709225 10712433 Bva05g00277 05 1355049 1359092 ECH
Bva03g00342 03 2014161 2017345 Bva05g00277 05 1355049 1359092 ECH
Bva06g01767 06 12240431 12243105 Bva05g00277 05 1355049 1359092 ECH
Bva05g00277 05 1355049 1359092 Bva05g00277 05 1355049 1359092 ECH