Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02790 ATGGAGGAAGATACTGCTGCGGGGAAGAATGAGGAAGAGGAGTTCAACACTGGACCACTATCTGTACTAATGATGAGTGTTAAAAATAATACCCAGGTATTGATAAATTGTCGGAATAACAAAAAGCTTCTGGGTCGTGTAAGAGCTTTTGATAGGCATTGCAACATGGTTCTTGAAAATGTCAGGGAGATGTGGACCGAGGTGCCCAAAACTGGTAAAGGAAAGAAAAAGGCCCAGCCAGTGAACAAGGATAGATTCATTAGCAAAATGTTCCTCCGTGGAGATTCTGTCATCATTGTTCTTAGGAACCCCAAATGA 318 0.4214 MEEDTAAGKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02790 105 SUPERFAMILY Sm-like ribonucleoproteins 18 103 IPR010920 -
Vimu5g02790 105 Pfam LSM domain 26 100 IPR001163 -
Vimu5g02790 105 SMART Sm3 23 102 IPR001163 -
Vimu5g02790 105 ProSiteProfiles Sm domain profile. 20 105 IPR047575 GO:0003723
Vimu5g02790 105 FunFam Small nuclear ribonucleoprotein Sm D2 13 105 - -
Vimu5g02790 105 Gene3D - 13 105 - -
Vimu5g02790 105 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2 2 105 IPR027248 GO:0008380|GO:0030532
Vimu5g02790 105 CDD Sm_D2 15 104 IPR027248 GO:0008380|GO:0030532
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02790 Vimu-Chr5 37380501 37381466 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02790 K11096 - qsu:112006547 210.305