Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu10g0949 . . Adu02g00615 . . Ahy12g0721 Ahy2g0574 . . . . . Arst2g00768 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco1g00861 . . . . . . Spst4g01752 . . . . . . . . . . .
Pvu10g0950 . . . . . . . Aip02g00739 . Amo12g0541 . . Arst2g00767 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco1g00860 . . . . . . Spst4g01753 . . . . . . . . . . .
Pvu10g0951 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vra9g1232
Pvu10g0952 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0953 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0954 . . Adu02g00614 . . Ahy12g0715 Ahy2g0573 Aip02g00734 . Amo12g0532 . . Arst2g00766 . . Bva02g00753 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0955 . . Adu02g00612 . . Ahy12g0709 Ahy2g0572 . . Amo12g0531 . . Arst2g00765 . . . . . . Dod07g1876 . . . . . . . . . . . . . . . . . . . . . . . . . Phco1g00859 . . . . . . Spst4g01754 . . . . . . . . . . .
Pvu10g0956 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vra9g1242
Pvu10g0957 . . . . . Ahy12g0699 Ahy2g0571 Aip02g00723 . Amo12g0523 . . Arst2g00762 . . . . . . Dod07g1880 . . . . . . . . . . . . . . . . . . . . . . . . . Phco1g00857 . . . . . . Spst4g01755 . . . . . . . Vimu9g00411 . . Vra9g1274
Pvu10g0958 . . . . . . . Aip02g00720 . Amo12g0522 . . Arst2g00761 . . . . . . Dod07g1887 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu4g2713 . . . . . . Vimu9g00408 . . Vra9g1275
   
Previous Page 2498 of 2800 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Vra Vra9g1242 Chr9 19481408 19484382 +
Pvu Pvu10g0949 Chr10 33625707 33642450 +
Adu Adu02g00615 Chr02 8280236 8294263 -
Ahy Ahy12g0721 Chr12 12150878 12186524 +
Ahy Ahy2g0574 Chr2 8291120 8312582 -
Arst Arst2g00768 Chr2 8207260 8228301 -
Phco Phco1g00861 Chr1 8236043 8251817 -
Spst Spst4g01752 Chr4 57558410 57561890 +
Pvu Pvu10g0950 Chr10 33654536 33666311 -
Aip Aip02g00739 Chr02 11418572 11439097 +
Amo Amo12g0541 Chr12 9522393 9541228 +
Arst Arst2g00767 Chr2 8207260 8228301 -
Phco Phco1g00860 Chr1 8194667 8197165 -
Spst Spst4g01753 Chr4 57562380 57596139 +
Pvu Pvu10g0951 Chr10 33687681 33688313 -
Vra Vra9g1232 Chr9 19180552 19181618 -
Pvu Pvu10g0952 Chr10 33757477 33758821 -
Pvu Pvu10g0953 Chr10 33759691 33760076 -
Pvu Pvu10g0954 Chr10 33762254 33763188 +
Adu Adu02g00614 Chr02 8184803 8190439 -
Ahy Ahy12g0715 Chr12 12024273 12040858 +
Ahy Ahy2g0573 Chr2 8231690 8253424 -
Aip Aip02g00734 Chr02 11231375 11244778 +
Amo Amo12g0532 Chr12 9335603 9373371 +
Arst Arst2g00766 Chr2 8207260 8228301 -
Bva Bva02g00753 Chr02 11101161 11104085 -
Pvu Pvu10g0955 Chr10 33767881 33774101 +
Adu Adu02g00612 Chr02 8120518 8135411 -
Ahy Ahy12g0709 Chr12 11823334 11862242 -
Ahy Ahy2g0572 Chr2 8190431 8218297 -
Amo Amo12g0531 Chr12 9283027 9301323 +
Arst Arst2g00765 Chr2 8207260 8228301 -
Dod Dod07g1876 Chr07 48615456 48628056 -
Phco Phco1g00859 Chr1 8186311 8194624 -
Spst Spst4g01754 Chr4 57602851 57610227 -
Pvu Pvu10g0956 Chr10 33801406 33802431 +
Vra Vra9g1242 Chr9 19481408 19484382 +
Pvu Pvu10g0957 Chr10 33857347 33872725 +
Ahy Ahy12g0699 Chr12 11438064 11472539 +
Ahy Ahy2g0571 Chr2 8115195 8138505 -
Aip Aip02g00723 Chr02 10856496 10870600 +
Amo Amo12g0523 Chr12 9024002 9047330 +
Arst Arst2g00762 Chr2 8049286 8071235 -
Dod Dod07g1880 Chr07 48682848 48685360 -
Phco Phco1g00857 Chr1 8154199 8165213 -
Spst Spst4g01755 Chr4 57610834 57614133 -
Vimu Vimu9g00411 Chr9 4925603 4936466 +
Vra Vra9g1274 Chr9 20601854 20636650 -
Pvu Pvu10g0958 Chr10 33885638 33900128 +
Aip Aip02g00720 Chr02 10802151 10820534 +
Amo Amo12g0522 Chr12 8920558 8940128 +
Arst Arst2g00761 Chr2 8049286 8071235 -
Dod Dod07g1887 Chr07 48963294 48977187 -
Ssu Ssu4g2713 Chr4 69200874 69208758 -
Vimu Vimu9g00408 Chr9 4901608 4911593 -
Vra Vra9g1275 Chr9 20651601 20665346 -