Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu10g0959 . . . . . Ahy12g0684 . Aip02g00709 . . . . . . . Bva02g00741 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco1g00855 . . . . . . . Ssu4g2714 . . . . . . . . . Vra9g1276
Pvu10g0960 . . . . . . . . . Amo12g0511 . . Arst2g00760 . . . . . . Dod07g1889 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu4g2716 Sto1g1531 . . . . . Vimu9g00405 . . .
Pvu10g0961 . . Adu02g02387 . . Ahy12g2518 Ahy2g2181 . . Amo12g2986 . . . . . . . . . . . . . . . . Lal6g0915 . . Lan11g0901 . . Lapu10g00059 . . . . . Lja3g1958 . . . . . . Phco1g00854 . Psa4g4593 . . . . . . . . . . . . . . . .
Pvu10g0962 . . Adu02g02388 . . . . . . . . . . . . . . . . . . . . . . . Lal6g0914 . . Lan11g0900 . . Lapu10g00058 . . . . . Lja3g1959 . . . . . . . . Psa4g4594 . . . . . . . . . . . . . . . .
Pvu10g0963 . . Adu02g02389 . . Ahy12g2519 Ahy2g2182 . . . . . . . . . . . . . . . . . . . . . . . . . Lapu10g00057 . . . . . Lja3g1960 . . . . . . Phco1g00852 . Psa4g4598 . . . . . . . . . . . . . . . .
Pvu10g0964 . . Adu02g02390 . . Ahy12g2520 Ahy2g2183 . . Amo12g2987 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0965 . . Adu02g02391 . . Ahy12g2521 Ahy2g2184 . . Amo12g2989 . . . . . . . . . . . . . . . . Lal6g0913 . . Lan11g0899 . . Lapu10g00056 . . . . . Lja3g1963 . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0966 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0967 . . Adu02g02392 . . Ahy12g2522 Ahy2g2185 . . Amo12g2990 . . . . . . . . . . . . . . . . Lal6g0912 . . Lan11g0898 . . Lapu10g00054 . . . . . Lja3g1964 . . . . . . Phco1g00849 . . . . . . . . . . . . . . . . . .
Pvu10g0968 . . Adu02g02393 . . Ahy12g2523 Ahy2g2186 . . Amo12g2991 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Pvu Pvu10g0959 Chr10 33917805 33922006 +
Ahy Ahy12g0684 Chr12 11066197 11090510 -
Aip Aip02g00709 Chr02 10543382 10551573 -
Bva Bva02g00741 Chr02 10973676 10975304 +
Phco Phco1g00855 Chr1 8130573 8133476 +
Ssu Ssu4g2714 Chr4 69439472 69442333 -
Vra Vra9g1276 Chr9 20665461 20668872 -
Pvu Pvu10g0960 Chr10 33924445 33932822 +
Amo Amo12g0511 Chr12 8735351 8755772 -
Arst Arst2g00760 Chr2 8049286 8123415 -
Dod Dod07g1889 Chr07 49165801 49166344 +
Ssu Ssu4g2716 Chr4 69488736 69492460 -
Sto Sto1g1531 Chr1 22866548 22882377 -
Vimu Vimu9g00405 Chr9 4839437 4862415 +
Pvu Pvu10g0961 Chr10 33946754 33950212 -
Adu Adu02g02387 Chr02 89346254 89348199 -
Ahy Ahy12g2518 Chr12 114115756 114119748 -
Ahy Ahy2g2181 Chr2 97567236 97571225 -
Amo Amo12g2986 Chr12 117327923 117331866 -
Lal Lal6g0915 Chr6 6347207 6350602 +
Lan Lan11g0901 Chr11 9084055 9087747 +
Lapu Lapu10g00059 Chr10 2037132 2040786 +
Lja Lja3g1958 Chr3 22492492 22496026 -
Phco Phco1g00854 Chr1 8122399 8124081 +
Psa Psa4g4593 Chr4 410257205 410261389 -
Pvu Pvu10g0962 Chr10 33957859 33961157 -
Adu Adu02g02388 Chr02 89353269 89355940 -
Lal Lal6g0914 Chr6 6335737 6346058 +
Lan Lan11g0900 Chr11 9079225 9082543 +
Lapu Lapu10g00058 Chr10 2031475 2034823 +
Lja Lja3g1959 Chr3 22497732 22501268 -
Psa Psa4g4594 Chr4 410342543 410345961 -
Pvu Pvu10g0963 Chr10 34005917 34007381 -
Adu Adu02g02389 Chr02 89355996 89358782 -
Ahy Ahy12g2519 Chr12 114127647 114128603 -
Ahy Ahy2g2182 Chr2 97579682 97580638 -
Lapu Lapu10g00057 Chr10 2025617 2026787 +
Lja Lja3g1960 Chr3 22508535 22509867 -
Phco Phco1g00852 Chr1 8092532 8093521 +
Psa Psa4g4598 Chr4 410585414 410587162 +
Pvu Pvu10g0964 Chr10 34051286 34052226 +
Adu Adu02g02390 Chr02 89366992 89368103 +
Ahy Ahy12g2520 Chr12 114137088 114138655 +
Ahy Ahy2g2183 Chr2 97589032 97590303 +
Amo Amo12g2987 Chr12 117349300 117350467 +
Pvu Pvu10g0965 Chr10 34055353 34056594 +
Adu Adu02g02391 Chr02 89372153 89373764 +
Ahy Ahy12g2521 Chr12 114162026 114163877 +
Ahy Ahy2g2184 Chr2 97594969 97596978 +
Amo Amo12g2989 Chr12 117374088 117375920 +
Lal Lal6g0913 Chr6 6326567 6328415 -
Lan Lan11g0899 Chr11 9016907 9018706 -
Lapu Lapu10g00056 Chr10 2012907 2013942 -
Lja Lja3g1963 Chr3 22550757 22553219 +
Pvu Pvu10g0966 Chr10 34072196 34072517 +
Pvu Pvu10g0967 Chr10 34334899 34338637 +
Adu Adu02g02392 Chr02 89377147 89380019 +
Ahy Ahy12g2522 Chr12 114168999 114171903 +
Ahy Ahy2g2185 Chr2 97600529 97603406 +
Amo Amo12g2990 Chr12 117378380 117382297 +
Lal Lal6g0912 Chr6 6321068 6325129 -
Lan Lan11g0898 Chr11 9010921 9014881 -
Lapu Lapu10g00054 Chr10 1991555 1995519 -
Lja Lja3g1964 Chr3 22555939 22560310 +
Phco Phco1g00849 Chr1 8060882 8064563 -
Pvu Pvu10g0968 Chr10 34339988 34342268 -
Adu Adu02g02393 Chr02 89380096 89383782 -
Ahy Ahy12g2523 Chr12 114171913 114175582 -
Ahy Ahy2g2186 Chr2 97603420 97607082 -
Amo Amo12g2991 Chr12 117382653 117386117 -