Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi18g2026 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g2027 . . . . . . . . . . . . Aip09g00018 . . . . . . . . . . Bach9g01839 . . Bva07g00154 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa7g00760 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Pvu11g2245 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g2028 . . . . . . . . Aev04g3761 . Ahy13g1280 . Aip03g01399 . . . . . . . . . . Bach9g01840 . . Bva07g00155 . . . . . . . Dod03g2472 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa7g00759 . . . . . . . . . . Mal7g0960 . . . . . . . Mtr4g0863 . . . . . . . . . . . . . . . . . . Pvu11g2244 . . . . . Spst11g00251 . . . . Tpr4g1079 . . . Tsu06g00799 . . . . . . . . . . . . .
Vvi18g2029 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva07g00164 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa7g00757 . . . . . . . . . . Mal7g0956 . . . . . . . Mtr4g0860 . . . . . . . . . . Pste1g04218 . . . . . Pumo10g02732 . Pvu11g2243 . . . . . Spst11g00250 . . . . Tpr4g1076 . . . Tsu06g00795 . . Vian5g00021 . . . . . Viun11g00016 . . . .
Vvi18g2030 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g2031 . . . . . . . . . . . . . . . . . . . Apr6g0842 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g2032 . . . . . . . . . . . . . . . . . . . Apr6g0841 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g2033 . . . . . . . . . . . . . . . . . . . Apr6g0840 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g2034 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g2035 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Aev Aev04g3761 Chr04 34832536 34835619 +
Ahy Ahy13g1280 Chr13 15135047 15139885 +
Aip Aip03g01399 Chr03 14595451 14600223 +
Dod Dod03g2472 Chr03 56278140 56281944 -
Vvi Vvi18g2026 Chr18 28050978 28051631 -
Vvi Vvi18g2027 Chr18 28114785 28119008 +
Aip Aip09g00018 Chr09 190931 193204 -
Bach Bach9g01839 Chr9 25639464 25644005 +
Bva Bva07g00154 Chr07 2698603 2702943 +
Lasa Lasa7g00760 Chr7 56375919 56380118 -
Pvu Pvu11g2245 Chr11 50155120 50159314 -
Vvi Vvi18g2028 Chr18 28121062 28130911 -
Aev Aev04g3761 Chr04 34832536 34835619 +
Ahy Ahy13g1280 Chr13 15135047 15139885 +
Aip Aip03g01399 Chr03 14595451 14600223 +
Bach Bach9g01840 Chr9 25664538 25681255 -
Bva Bva07g00155 Chr07 2710210 2724547 -
Dod Dod03g2472 Chr03 56278140 56281944 -
Lasa Lasa7g00759 Chr7 56266546 56280739 +
Mal Mal7g0960 Chr7 26686728 26700008 +
Mtr Mtr4g0863 Chr4 11042641 11057802 +
Pvu Pvu11g2244 Chr11 50142442 50154147 +
Spst Spst11g00251 Chr11 8175145 8194453 +
Tpr Tpr4g1079 Chr4 10393603 10407904 +
Tsu Tsu06g00799 Chr06 7142220 7154998 +
Vvi Vvi18g2029 Chr18 28144074 28158425 +
Bva Bva07g00164 Chr07 2807391 2810690 +
Lasa Lasa7g00757 Chr7 55918582 55926366 +
Mal Mal7g0956 Chr7 26550764 26558062 +
Mtr Mtr4g0860 Chr4 11015830 11024312 +
Pste Pste1g04218 Chr1 26533078 26541382 +
Pumo Pumo10g02732 Chr10 51041146 51047117 -
Pvu Pvu11g2243 Chr11 50132400 50137832 -
Spst Spst11g00250 Chr11 8149906 8155163 -
Tpr Tpr4g1076 Chr4 10361246 10368950 +
Tsu Tsu06g00795 Chr06 7098114 7115907 +
Vian Vian5g00021 Chr5 301587 306629 +
Viun Viun11g00016 Chr11 161836 166845 +
Vvi Vvi18g2030 Chr18 28161873 28162865 +
Vvi Vvi18g2031 Chr18 28167871 28168860 +
Apr Apr6g0842 Chr6 12870931 12872116 +
Vvi Vvi18g2032 Chr18 28180091 28181053 +
Apr Apr6g0841 Chr6 12865957 12867076 +
Vvi Vvi18g2033 Chr18 28183941 28184960 -
Apr Apr6g0840 Chr6 12860869 12862209 +
Vvi Vvi18g2034 Chr18 28209120 28216036 +
Vvi Vvi18g2035 Chr18 28239850 28240708 -