Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g2035 ATGACGTACATATCTTACTCGAACATCTACGCGAATCTGGTGAGAAACTGCCTCAAGAAGCCATTCAAATCCGAAGACCTCACTCACGAGAAGGTCCATTTCTCCATTTCCAAATGGGATAATGGCGTTCCCCAGAAGCCCAGCTTCCACCAACGCACCTCAGCACACTGCCACCAACTCTATATTTGCTTGTGGAGAAACAACAGGAAAAAAGAACTAATAAAGTGA 228 0.4518 MTYISYSNIYANLVRNCLKKPFKSEDLTHEKVHFSISKWDNGVPQKPSFHQRTSAHCHQLYICLWRNNRKKELIK* 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g2035 75 Gene3D ATP synthase, F1 complex, epsilon subunit superfamily, mitochondrial 1 52 IPR036742 GO:0000275|GO:0015986|GO:0046933
Vvi18g2035 75 SUPERFAMILY Epsilon subunit of mitochondrial F1F0-ATP synthase 1 39 IPR036742 GO:0000275|GO:0015986|GO:0046933
Vvi18g2035 75 CDD F1-ATPase_epsilon 1 39 IPR006721 GO:0000275|GO:0015986|GO:0046933
Vvi18g2035 75 Pfam Mitochondrial ATP synthase epsilon chain 1 42 IPR006721 GO:0000275|GO:0015986|GO:0046933
Vvi18g2035 75 PANTHER ATP SYNTHASE EPSILON CHAIN, MITOCHONDRIAL 1 62 IPR006721 GO:0000275|GO:0015986|GO:0046933
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g2035 Vvi-Chr18 28239850 28240708 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g2035 K02135 - vvi:100248446 93.2041