LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi18g2027	ATGCAGAGATCACGTAGAGCTCTTCTGCAACGAAGAGCTTTAGAGAAAGCTATCATCGGCCGGAGTCGGTTGTATAAGGTTTCATTGTCTTTGGTCTTTGTGTTGTGGGGCCTTGTCTTTCTTTTGAGCTTATGGATCAGTCATGGTGATGGATACCAAGATGGATCTGGCATGCCTCTCATTGGCATATCAACTTGGGATGAAGCAAAGCAGGGCCTTAATCTAGGTTCTTGTTCTGTTGATGAACATTCTTTGATAGAAACCAATTCTGACAATTCTTATGAAGGTTCCAGAAATGATGCTGAAACTAAGGATTTCACCAATGAATTACATAGCAAAGGAAATGTAAAATCTACCTTGCCTGTTGAGGAGGGATCTGAGGTGGAGAAATCCAGTTCAGATGTAAAATCCGAAAAGGATACCCCAAAGAATGACAGGTTATCCCGTGCTGTGCCACCGGGCCTTGATGAATTCAAGAGCAAGGCAATTAGTTATAAAAGTAAATCTGTAACTGGTCAGGCTGGAAACGTCATACATAGAGTAGAGCCTGGGGGTGCAGATTACAATTATGCTTCAGCTTCAAAGGGAGCGAAGGTCTTGGCTTCTAACAAGGAAGCAAAGGGTGCTTCAAATATTTTAGGCAAAGACAAGGACAAGTACCTTAGAAATCCCTGTTCTGCTGAAGAGAAATTTGTCGTTATTGAACTTTCAGAAGAAACCTTGGTGGATACTATTGAAATTGCAAATTTTGAGCATTACTCTTCTAATCCAAAAGATTTTGAGTTGCTGGGCAGTTCGGTTTTTCCAACAGATGAGTGGGTCAAGCTTGGGAATTTTACTGCTGCAAATGTGAAGCATGCTCAGAGGTTTGCTCTTCACGAGCCAAAATGGGTGAGATATCTAAAGTTAAATCTACTGAGCCATCATGGTACAGAATTCTATTGCACACTGAGTGTTGTGGAAGTATATGGAGTGGATGCTGTTGAGCGAATGCTGGAGGATTTGATCTCTGTTCAAGATAATCCATTTGTACCTGAGGAAATTACTGCTGAGAAAAAGTCAATTCCCTCCCAGCCGGAGCCCACTGAGGGTAATAATCTGTATCAGAAACCTGTTAGTGAAACAGAATCTGACCCTCTACTTGACAAACCTGAAGCTATTAAAAGTAACATGCCAGATCCAGTTGAAGAAATTCGTCATCAACAGGTTGGAAGGATGCCTGGGGACACTGTTCTTAAGATACTGATGCAAAAAGTTCAATCACTTGATTTAAGTTTGTCTGTTTTGGAGCGATACCTGGAGGATTTGAACTCCAGATATGGTAACATTTTCAAAGAATTTGACAAAGAAATTGAGGAGAAAGATGTTCTTCTGGAGAATATAAGATCAGACATAAGGAACTTCCTTGATAGCAAGGAGATTATTACCAAAGATGTCAGTGATCTTATTTCATGGAAATCCCTTGTTTCCCTACAGTTGGATAATCTACTCAAGGACAATGCTCTTCTCAGAGCGGAGGTCCAAAAGGTTCAGGAGGACCAGACACACATGGAGAATAAGGGTATTGCAGTGTTTCTTATATGCCTAATTTTCGGATTCTGGGCTTTTGCGAGGCTATTGGTAGATATGATGTTGAGTGTTTACATGGCGGTGAGTGTTAATAATAGATCAGATAAATCCAGGAATTTTTGTGGGACGAGCTCTTCCTGGGTATTCCTGCTATTGAGCTGTAGCATTATTATTGTGATCCTGTCATTATAA	1761	0.4083	MQRSRRALLQRRALEKAIIGRSRLYKVSLSLVFVLWGLVFLLSLWISHGDGYQDGSGMPLIGISTWDEAKQGLNLGSCSVDEHSLIETNSDNSYEGSRNDAETKDFTNELHSKGNVKSTLPVEEGSEVEKSSSDVKSEKDTPKNDRLSRAVPPGLDEFKSKAISYKSKSVTGQAGNVIHRVEPGGADYNYASASKGAKVLASNKEAKGASNILGKDKDKYLRNPCSAEEKFVVIELSEETLVDTIEIANFEHYSSNPKDFELLGSSVFPTDEWVKLGNFTAANVKHAQRFALHEPKWVRYLKLNLLSHHGTEFYCTLSVVEVYGVDAVERMLEDLISVQDNPFVPEEITAEKKSIPSQPEPTEGNNLYQKPVSETESDPLLDKPEAIKSNMPDPVEEIRHQQVGRMPGDTVLKILMQKVQSLDLSLSVLERYLEDLNSRYGNIFKEFDKEIEEKDVLLENIRSDIRNFLDSKEIITKDVSDLISWKSLVSLQLDNLLKDNALLRAEVQKVQEDQTHMENKGIAVFLICLIFGFWAFARLLVDMMLSVYMAVSVNNRSDKSRNFCGTSSSWVFLLLSCSIIIVILSL*	587

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi18g2027	586	MobiDBLite	consensus disorder prediction	105	153	-	-
	Vvi18g2027	586	FunFam	Galactose-binding protein isoform 3	192	335	-	-
	Vvi18g2027	586	MobiDBLite	consensus disorder prediction	123	152	-	-
	Vvi18g2027	586	ProSiteProfiles	SUN domain profile.	160	327	IPR012919	-
	Vvi18g2027	586	MobiDBLite	consensus disorder prediction	376	390	-	-
	Vvi18g2027	586	SUPERFAMILY	Galactose-binding domain-like	208	323	IPR008979	-
	Vvi18g2027	586	Pfam	Sad1 / UNC-like C-terminal	203	325	IPR012919	-
	Vvi18g2027	586	Gene3D	-	198	335	-	-
	Vvi18g2027	586	MobiDBLite	consensus disorder prediction	351	390	-	-
	Vvi18g2027	586	Coils	Coil	493	520	-	-
	Vvi18g2027	586	PANTHER	MEMBRANE PROTEIN CH1 RELATED	1	572	IPR045120	GO:0016020
	Vvi18g2027	586	MobiDBLite	consensus disorder prediction	355	373	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi18g2027	Vvi-Chr18	28114785	28119008	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi18g2027	-		-	vvi:100249908	1079.32