Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g2028 ATGCCATGGGTTGCTTTAATTGGGCAATCTGTTTCAATTGCCTCTGCACAGTCTGGATCTGTTGGTTCTGAGAACTCGTTAGAAACTGCTTGGAGGGCTGAGAGTGAGAGTCTTAAATCCATACTGACGGGAGCCCCTCAAAGTAAGCTTGGGAGAATAGCTTTAGTGGATGCCCTGGCTCAGCAGATACGCAGTCGTATGAAAGTCCGACTTCCAAACCTCCTTTCTGGGTTACAAGGAAAGTCCCAAATAGTTGGGGATGAGTTAGCAAGGCTTGGTGAACAAATGGTCCATAGTTCTGAAGGCACTAGGGCTATAGCTTTGGAACTTTGCCGTGAATTTGAGGATAAGTTCCTCCTGCACATTGCAGGGGGTGAGGGTGCTGGTTGGAAGGTCGTTGCCAGTTTTGAGGGGAATTTTCCTAACAGGATCAAGCAGCTCCCTTTAGACAGGCATTTTGACATCAACAATGTCAAAAGGATTGTGTTAGAAGCTGATGGTTATCAACCATATCTTATATCTCCTGAGAAAGGTTTGAGATCGTTAATAAAAGGTGTCTTGGAGCTTGCAAAAGAGCCATCACGGCTTTGTGTTGATGAGGTGCACCGTGTCCTGGTAGATGTAGTTTCTGCTGCTGCAAATGCTACGCCAGGTCTGGGGAGATATCCTCCTTTCAAGAGAGAGGTTGTGGCAATTGCAACTGCTGCACTAGATGTGTTCAAGAATGAAGCTAAGAAAATGGTGGTTGCCCTAGTGGATATGGAGCGAGCTTTTGTGCCCCCTCAACACTTCATTCGTTTGGTGCAAAGAAGGATGGAGAGACAGCGACGGGAAGAAGAGCTGAAGAACCGATCCTCAAAAAAAGGACATGAGGCAGAGCAATCGATTTTGAATAGGGCAACTAGTCCTCAAACTGGTGGTCAGCAATCCGGAGGAAGTTTGAAATCAATGAAGGATAAATCTGGTCAGTCAGAAAAAGAAACACAAGAGGGCTCAGCTTTGAAGATAGCTGGTCCTGGTGGTGAGATCACAGCAGGCTTTCTATTGAAGAAAAGTGAAAAAACTAATGGATGGAGCAGGCGATGGTTTGTTTTAAATGAAAAGACTGGCAAGCTTGGTTACACCAAAAAGCAAGAGGAAAGGCATTTCCGTGGTGTCATCACTTTAGAGGAATGTAACGTAGAGGAGGTTTCAGATGAGGAAGAACCTCCCCGAAAAAGTTCGAAGGATAAGAAGGCCAATGGGCCTGATTCAGGAAAGAACACCAGTCTTGTTTTCAAGATAACGAGCAAGGTTCCATATAAAACAGTTTTGAAAGCCCACAGTGCTGTGGTGCTTAAGGCAGAGAGTATGGCAGATAAAGTTGAATGGGTAAACAAGATAAGCAGTGTTATTCAACCTTCCAAAGGGGGTCAAATGAAAGGGGCATCCACTGAAGGTGGTCTTACCATGAGGCAAAGTCTTTCTGATGGTTCCCTGGATACAATGGTCCGAAGACCTGCCGACCCAGAAGAAGAACTTCGATGGATGTCTCAAGAAGTGCGTGGCTATGTTGAAGCGGTTTTAAACAGTCTGGCTGCTAATGTCCCTAAAGCAGTTGTTCTTTGCCAAGTTGAGAAAGCTAAGGAAGACATGCTAAATCAGTTGTACAGCTCAATCAGCGCACAAAGCACAGCAAGGATCGAAGAGCTCCTTCTAGAGGATCAGAATGTAAAGCGTAGGAGGGAGCGCTACCAGAAGCAGTCCTCCCTCCTTTCAAAACTAACTCGCCAACTCAGCATTCATGACAATCGGGCAACTGCTGCCTCTAGCTGGTCAAATGGTGTTGGTGGAGCAGAAAGCAGCCCAAAAACCAGTGGTCCATCCGGTGGTGATGACTGGAGATCAGCATTTGATGCTGCAGCCAATGGACCTGTTGACTACAACTCTGATTTGTCTCGGTCTGGTTCTAATGGTCACAGTCGGCATTACAGTGACCCAGCACAGAATGGTGATGTCAGCTCCGGCTCAAACTCCAGCCGCCGTACTCCCAACCGGCGGCCGCCAGCACCACCCCCGTCAGGTTCCTCAGGTTACAAATTTTTTTAG 2088 0.4684 MPWVALIGQSVSIASAQSGSVGSENSLETAWRAESESLKSILTGAPQSKLGRIALVDALAQQIRSRMKVRLPNLLSGLQGKSQIVGDELARLGEQMVHSSEGTRAIALELCREFEDKFLLHIAGGEGAGWKVVASFEGNFPNRIKQLPLDRHFDINNVKRIVLEADGYQPYLISPEKGLRSLIKGVLELAKEPSRLCVDEVHRVLVDVVSAAANATPGLGRYPPFKREVVAIATAALDVFKNEAKKMVVALVDMERAFVPPQHFIRLVQRRMERQRREEELKNRSSKKGHEAEQSILNRATSPQTGGQQSGGSLKSMKDKSGQSEKETQEGSALKIAGPGGEITAGFLLKKSEKTNGWSRRWFVLNEKTGKLGYTKKQEERHFRGVITLEECNVEEVSDEEEPPRKSSKDKKANGPDSGKNTSLVFKITSKVPYKTVLKAHSAVVLKAESMADKVEWVNKISSVIQPSKGGQMKGASTEGGLTMRQSLSDGSLDTMVRRPADPEEELRWMSQEVRGYVEAVLNSLAANVPKAVVLCQVEKAKEDMLNQLYSSISAQSTARIEELLLEDQNVKRRRERYQKQSSLLSKLTRQLSIHDNRATAASSWSNGVGGAESSPKTSGPSGGDDWRSAFDAAANGPVDYNSDLSRSGSNGHSRHYSDPAQNGDVSSGSNSSRRTPNRRPPAPPPSGSSGYKFF* 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g2028 695 FunFam Dynamin-2A 334 470 - -
Vvi18g2028 695 PANTHER DYNAMIN 19 588 IPR022812 -
Vvi18g2028 695 MobiDBLite consensus disorder prediction 599 622 - -
Vvi18g2028 695 SMART PH_update 342 468 IPR001849 -
Vvi18g2028 695 MobiDBLite consensus disorder prediction 276 338 - -
Vvi18g2028 695 MobiDBLite consensus disorder prediction 394 422 - -
Vvi18g2028 695 Gene3D - 330 466 IPR011993 -
Vvi18g2028 695 ProSiteProfiles GED domain profile. 507 600 IPR020850 -
Vvi18g2028 695 MobiDBLite consensus disorder prediction 276 294 - -
Vvi18g2028 695 FunFam Dynamin-2A 462 575 - -
Vvi18g2028 695 Pfam Dynamin central region 25 263 IPR000375 -
Vvi18g2028 695 Coils Coil 561 581 - -
Vvi18g2028 695 MobiDBLite consensus disorder prediction 468 487 - -
Vvi18g2028 695 FunFam Dynamin-2A 98 305 - -
Vvi18g2028 695 MobiDBLite consensus disorder prediction 295 318 - -
Vvi18g2028 695 Pfam PH domain 346 465 IPR001849 -
Vvi18g2028 695 SUPERFAMILY PH domain-like 342 466 - -
Vvi18g2028 695 Pfam Dynamin GTPase effector domain 505 587 IPR003130 GO:0003924|GO:0005525
Vvi18g2028 695 MobiDBLite consensus disorder prediction 599 695 - -
Vvi18g2028 695 Gene3D Dynamin, middle domain 467 575 - -
Vvi18g2028 695 ProSiteProfiles PH domain profile. 341 466 IPR001849 -
Vvi18g2028 695 Gene3D Dynamin, middle domain 99 305 - -
Vvi18g2028 695 MobiDBLite consensus disorder prediction 641 677 - -
Vvi18g2028 695 MobiDBLite consensus disorder prediction 399 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g2028 Vvi-Chr18 28121062 28130911 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g2028 K01528 - vvi:100255051 1281.16