Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi18g1406 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Psa6g4255 . . . . . . . . . . . . . . . . . . . . Sto8g2339 . . . . . . . . . . . . . . . . . .
Vvi18g1407 . . . . . . . . Aev09g2067 . Ahy19g2725 . Aip09g03188 . . . Amo19g3452 . . . . . Bach1g00145 . . . . . . . . . . . Dod06g0962 . . . . . . . Gma16g01429 . . . . . . . . . Lal2g1029 Lal9g0908 . . . . . . Lapu4g00958 . . . . . . . . . . . Lja5g0809 Lja2g2865 . . . . . . . . . . . . Phco5g01108 . . . . . . . . . . . Pumo6g02264 . Pvu4g0908 . Rops5g01211 . Seca10g03464 . Spst4g03460 . . . . Sto8g2331 . . . . . . Vian8g00821 . Vifa1g04529 . Vimu8g00126 . Viun4g01649 . Vivi2g05143 . . .
Vvi18g1408 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1409 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1410 . . . . . . . . Aev09g2068 . Ahy19g2726 . Aip09g03190 . . . Amo19g3455 . . . . . Bach1g00146 . . . . . Car04g01054 . . . . . Dod06g0961 . . . . . . . Gma16g01430 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja5g0808 Lja2g2864 Mal1g2245 . . . . . . . Mtr1g3562 . . . Phco5g01107 . . . Psa6g4292 . Pste9g00898 . . . . . Pumo6g02265 . Pvu4g0909 . Rops5g01206 . . . . . . . . Sto8g2327 Tpr1g0934 . . . Tsu01g04222 . Vian8g00818 . Vifa1g04535 . Vimu8g00125 . Viun4g01651 . . . . .
Vvi18g1411 . . . . . . . . Aev09g2069 . Ahy19g2727 . Aip09g03191 . . . Amo19g3456 . . . . . . . . . . . Car04g01055 . . . . . Dod06g0959 . . . . . . Gma20g01630 . . . . . . . . . Lal1g0898 . . . . . . . . . . . . . . . . . . . . Lja1g4853 . Mal1g2244 . . . . . . . Mtr1g3563 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto8g2326 Tpr1g0930 . . . Tsu01g04223 . . . . . . . . . . . . .
Vvi18g1412 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1413 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1414 . . . . . . . . Aev09g2070 . Ahy19g2728 . Aip09g03192 . . . Amo19g3457 . . . . . . . . . . . Car04g01056 . . . . . Dod06g0958 . . . . . . Gma20g01628 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja5g0805 . Mal1g2242 . . . . . . . Mtr1g3564 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto8g2324 Tpr1g0928 . . . Tsu01g04225 . . . . . . . . . . . . .
Vvi18g1415 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi18g1406 Chr18 15792757 15844126 -
Psa Psa6g4255 Chr6 375609167 375617793 -
Sto Sto8g2339 Chr8 15750848 15759779 -
Vvi Vvi18g1407 Chr18 15866681 15869060 -
Aev Aev09g2067 Chr09 23847055 23847990 -
Ahy Ahy19g2725 Chr19 148610063 148612856 -
Aip Aip09g03188 Chr09 137289384 137291778 -
Amo Amo19g3452 Chr19 147937974 147940112 -
Bach Bach1g00145 Chr1 1771280 1773835 -
Dod Dod06g0962 Chr06 12279731 12283146 +
Gma Gma16g01429 Chr16 33324027 33327306 -
Lal Lal2g1029 Chr2 7051030 7053818 +
Lal Lal9g0908 Chr9 6844079 6846140 -
Lapu Lapu4g00958 Chr4 25002565 25004549 +
Lja Lja5g0809 Chr5 7608261 7610489 +
Lja Lja2g2865 Chr2 46984411 46987952 +
Phco Phco5g01108 Chr5 42363814 42366518 -
Pumo Pumo6g02264 Chr6 43060898 43064130 -
Pvu Pvu4g0908 Chr4 16291363 16294320 +
Rops Rops5g01211 Chr5 25893770 25897308 -
Seca Seca10g03464 Chr10 60986185 60989199 -
Spst Spst4g03460 Chr4 75244626 75247295 -
Sto Sto8g2331 Chr8 15696857 15699151 +
Vian Vian8g00821 Chr8 18186677 18189175 -
Vifa Vifa1g04529 Chr1 707043307 707044923 +
Vimu Vimu8g00126 Chr8 4665500 4668950 -
Viun Viun4g01649 Chr4 29897320 29899951 +
Vivi Vivi2g05143 Chr2 173767637 173769870 +
Vvi Vvi18g1408 Chr18 15880138 15885288 +
Vvi Vvi18g1409 Chr18 15898547 15905025 +
Vvi Vvi18g1410 Chr18 15923771 15925870 -
Aev Aev09g2068 Chr09 23869456 23871268 -
Ahy Ahy19g2726 Chr19 148640749 148644997 -
Aip Aip09g03190 Chr09 137351763 137355617 -
Amo Amo19g3455 Chr19 148071082 148075305 -
Bach Bach1g00146 Chr1 1794875 1797421 -
Car Car04g01054 Chr04 10696210 10700476 -
Dod Dod06g0961 Chr06 12246803 12250972 +
Gma Gma16g01430 Chr16 33333371 33347907 +
Lja Lja5g0808 Chr5 7556562 7560260 +
Lja Lja2g2864 Chr2 46893449 46898586 +
Mal Mal1g2245 Chr1 29663243 29666013 +
Mtr Mtr1g3562 Chr1 47319040 47322216 -
Phco Phco5g01107 Chr5 42180670 42182501 -
Psa Psa6g4292 Chr6 380584502 380588038 -
Pste Pste9g00898 Chr9 5049203 5052531 -
Pumo Pumo6g02265 Chr6 43101676 43103655 +
Pvu Pvu4g0909 Chr4 16594653 16595177 -
Rops Rops5g01206 Chr5 25812930 25815768 +
Sto Sto8g2327 Chr8 15680489 15682864 +
Tpr Tpr1g0934 Chr1 8021438 8025156 +
Tsu Tsu01g04222 Chr01 50062554 50066372 -
Vian Vian8g00818 Chr8 18048039 18053154 -
Vifa Vifa1g04535 Chr1 708076551 708076937 +
Vimu Vimu8g00125 Chr8 4651899 4653719 +
Viun Viun4g01651 Chr4 29979163 29981077 -
Vvi Vvi18g1411 Chr18 15967755 15986135 -
Aev Aev09g2069 Chr09 23873069 23878656 -
Ahy Ahy19g2727 Chr19 148650081 148657057 -
Aip Aip09g03191 Chr09 137359904 137365661 -
Amo Amo19g3456 Chr19 148080211 148087296 -
Car Car04g01055 Chr04 10731460 10740244 -
Dod Dod06g0959 Chr06 12218667 12227756 +
Gma Gma20g01630 Chr20 43387862 43398940 +
Lal Lal1g0898 Chr1 6451449 6462754 +
Lja Lja1g4853 Chr1 66214571 66217698 -
Mal Mal1g2244 Chr1 29611846 29617671 +
Mtr Mtr1g3563 Chr1 47354583 47364309 -
Sto Sto8g2326 Chr8 15647428 15656422 +
Tpr Tpr1g0930 Chr1 7970721 7979197 +
Tsu Tsu01g04223 Chr01 50098231 50105219 -
Vvi Vvi18g1412 Chr18 15986161 15987116 -
Vvi Vvi18g1413 Chr18 15998867 15999292 +
Vvi Vvi18g1414 Chr18 16039781 16053753 -
Aev Aev09g2070 Chr09 23884707 23887792 -
Ahy Ahy19g2728 Chr19 148661516 148665592 -
Aip Aip09g03192 Chr09 137370387 137374429 -
Amo Amo19g3457 Chr19 148091871 148095933 -
Car Car04g01056 Chr04 10740479 10748115 -
Dod Dod06g0958 Chr06 12209745 12216593 +
Gma Gma20g01628 Chr20 43367967 43371947 +
Lja Lja5g0805 Chr5 7481568 7486395 +
Mal Mal1g2242 Chr1 29594660 29603045 +
Mtr Mtr1g3564 Chr1 47367167 47372584 -
Sto Sto8g2324 Chr8 15637319 15642980 +
Tpr Tpr1g0928 Chr1 7952749 7957404 +
Tsu Tsu01g04225 Chr01 50109814 50116027 -
Vvi Vvi18g1415 Chr18 16093493 16093805 -