Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1409 ATGTTTGCTGCCTGTACACTTTTTGAAAAAACTTGGATTGAAGTATGTAGATCATATGCTACAAATGTGGTTAAGCAGCTCAAGGAACAAGAAATGGTGATGCCTGGGCATTGGGAGGCCAACTTGCAGACAAAGCTAAATCGATACATACCCAATGTTGTAGTCTTCGGTGCTATGTGTATCAGTGCATTGACTATACTGGCTGATTTCATCAGTACAATTAGCTCGGGCATAGGAATTTTATGTGTCGTGACCATTATTTATCAATACTTTGAAACATTAAAGAAGGAGAGAGTTAGCAAGCTTGGCTTATTTAGTTGTAGAGTGTTCAGTCTTTTGTTTGATTCAAAGTTTCTACTTTGA 363 0.3774 MFAACTLFEKTWIEVCRSYATNVVKQLKEQEMVMPGHWEANLQTKLNRYIPNVVVFGAMCISALTILADFISTISSGIGILCVVTIIYQYFETLKKERVSKLGLFSCRVFSLLFDSKFLL* 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1409 120 FunFam SecY protein transport family protein 22 105 - -
Vvi18g1409 120 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 1 100 IPR002208 GO:0015031|GO:0016020
Vvi18g1409 120 SUPERFAMILY Preprotein translocase SecY subunit 1 97 IPR023201 -
Vvi18g1409 120 Gene3D SecY subunit domain 1 106 IPR023201 -
Vvi18g1409 120 Pfam SecY 3 90 IPR002208 GO:0015031|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1409 Vvi-Chr18 15898547 15905025 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1409 1 106 Miscellaneous Gene Families AT1G29310 65.094 6.53e-46 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1409 K10956 - vvi:100855182 149.058